5JVR | pdb_00005jvr

The neck-linker of Mus musculus KIF3A fused to the alpha 7 helix of Drosophila melanogaster Kinesin-1 fused to EB1

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
H	d5jvrh_	All alpha proteins	EB1 dimerisation domain-like	EB1 dimerisation domain-like	EB1 dimerisation domain-like	Microtubule-associated protein EB1, C-terminal dimerization domain	Mouse (Mus musculus ) [TaxId: 10090 ], Fruit fly (Drosophila melanogaster ) [TaxId: 7227 ], Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
G	d5jvrg_	All alpha proteins	EB1 dimerisation domain-like	EB1 dimerisation domain-like	EB1 dimerisation domain-like	Microtubule-associated protein EB1, C-terminal dimerization domain	Mouse (Mus musculus ) [TaxId: 10090 ], Fruit fly (Drosophila melanogaster ) [TaxId: 7227 ], Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
F	d5jvrf1	All alpha proteins	EB1 dimerisation domain-like	EB1 dimerisation domain-like	EB1 dimerisation domain-like	Microtubule-associated protein EB1, C-terminal dimerization domain	Mouse (Mus musculus ) [TaxId: 10090 ], Fruit fly (Drosophila melanogaster ) [TaxId: 7227 ], Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
F	d5jvrf2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Mouse (Mus musculus ) [TaxId: 10090 ], Fruit fly (Drosophila melanogaster ) [TaxId: 7227 ], Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
E	d5jvre_	All alpha proteins	EB1 dimerisation domain-like	EB1 dimerisation domain-like	EB1 dimerisation domain-like	Microtubule-associated protein EB1, C-terminal dimerization domain	Mouse (Mus musculus ) [TaxId: 10090 ], Fruit fly (Drosophila melanogaster ) [TaxId: 7227 ], Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d5jvrd_	All alpha proteins	EB1 dimerisation domain-like	EB1 dimerisation domain-like	EB1 dimerisation domain-like	Microtubule-associated protein EB1, C-terminal dimerization domain	Mouse (Mus musculus ) [TaxId: 10090 ], Fruit fly (Drosophila melanogaster ) [TaxId: 7227 ], Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d5jvrc_	All alpha proteins	EB1 dimerisation domain-like	EB1 dimerisation domain-like	EB1 dimerisation domain-like	Microtubule-associated protein EB1, C-terminal dimerization domain	Mouse (Mus musculus ) [TaxId: 10090 ], Fruit fly (Drosophila melanogaster ) [TaxId: 7227 ], Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d5jvrb_	All alpha proteins	EB1 dimerisation domain-like	EB1 dimerisation domain-like	EB1 dimerisation domain-like	Microtubule-associated protein EB1, C-terminal dimerization domain	Mouse (Mus musculus ) [TaxId: 10090 ], Fruit fly (Drosophila melanogaster ) [TaxId: 7227 ], Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d5jvra_	All alpha proteins	EB1 dimerisation domain-like	EB1 dimerisation domain-like	EB1 dimerisation domain-like	Microtubule-associated protein EB1, C-terminal dimerization domain	Mouse (Mus musculus ) [TaxId: 10090 ], Fruit fly (Drosophila melanogaster ) [TaxId: 7227 ], Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H		e5jvrH1	A: cradle loop barrel	X: RIFT-related	H: acid protease	T: fn3	F:	ECOD (20:10:01)
G		e5jvrG1	A: cradle loop barrel	X: RIFT-related	H: acid protease	T: fn3	F:	ECOD (20:10:01)
F		e5jvrF1	A: HTH	X: HTH	H: winged helix domain	T: Glyco_hydro_18	F:	ECOD (20:10:01)
E		e5jvrE1	A: cradle loop barrel	X: RIFT-related	H: acid protease	T: fn3	F:	ECOD (20:10:01)
D		e5jvrD1	A: cradle loop barrel	X: RIFT-related	H: acid protease	T: fn3	F:	ECOD (20:10:01)
C		e5jvrC1	A: cradle loop barrel	X: RIFT-related	H: acid protease	T: fn3	F:	ECOD (20:10:01)
B		e5jvrB1	A: cradle loop barrel	X: RIFT-related	H: acid protease	T: fn3	F:	ECOD (20:10:01)
A		e5jvrA1	A: cradle loop barrel	X: RIFT-related	H: acid protease	T: fn3	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	1.20.5.1430	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
G	1.20.5.1430	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (utative)
F	1.20.5.1430	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
E	1.20.5.1430	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (utative)
D	1.20.5.1430	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (utative)
C	1.20.5.1430	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (utative)
B	1.20.5.1430	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (utative)
A	1.20.5.1430	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF03271	EB1-like C-terminal motif (EB1)	EB1-like C-terminal motif	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Chimera protein of mouse KIF3A,fruit fly Kinesin-1 and human EB1	cytoskeletal motor activity microtubule motor activity polypeptide conformation or assembly isomerase activity isomerase activity macromolecular conformation isomerase activity catalytic activity ATP-dependent activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding cytoskeletal motor activity microtubule motor activity polypeptide conformation or assembly isomerase activity isomerase activity macromolecular conformation isomerase activity catalytic activity ATP-dependent activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding cytoskeletal protein binding microtubule binding protein binding tubulin binding tropomyosin binding plus-end-directed microtubule motor activity pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides small GTPase binding enzyme binding GTPase binding protein phosphatase binding phosphatase binding protein-containing complex binding intraciliary transport particle B binding spectrin binding kinesin binding RNA binding nucleic acid binding protein serine/threonine kinase binding kinase binding protein kinase binding cell adhesion molecule binding cadherin binding microtubule plus-end binding identical protein binding	microtubule organizing center organization centrosome separation microtubule cytoskeleton organization cellular component organization organelle organization centrosome cycle cellular process microtubule-based process cell cycle cellular component organization or biogenesis cytoskeleton organization cell cycle process mitochondrion distribution localization microtubule organizing center organization centrosome separation microtubule cytoskeleton organization cellular component organization organelle organization centrosome cycle cellular process microtubule-based process cell cycle cellular component organization or biogenesis cytoskeleton organization cell cycle process mitochondrion distribution localization mitochondrion localization organelle localization intracellular distribution of mitochondria cellular component disassembly protein-containing complex organization protein-containing complex disassembly protein-RNA complex disassembly protein-RNA complex organization organelle disassembly stress granule disassembly cellular localization transport intracellular transport establishment of localization axo-dendritic transport establishment of localization in cell microtubule-based transport transport along microtubule cytoskeleton-dependent intracellular transport microtubule-based movement establishment of organelle localization nucleus localization nuclear migration vesicle localization establishment of vesicle localization synaptic vesicle localization synaptic vesicle transport multicellular organismal process blastoderm segmentation sexual reproduction cellular developmental process reproductive process anterior/posterior pattern specification anterior/posterior axis specification, embryo segmentation cell development cellular process involved in reproduction in multicellular organism pattern specification process developmental process involved in reproduction female gamete generation embryo development gamete generation oocyte development tripartite regional subdivision cellular component biogenesis embryonic axis specification multicellular organism development cellular component assembly anterior/posterior axis specification cell differentiation anatomical structure development cell maturation developmental process embryonic pattern specification oocyte axis specification oocyte construction multicellular organismal reproductive process oogenesis oocyte anterior/posterior axis specification cytoplasm organization developmental maturation regionalization pole plasm assembly anatomical structure maturation maternal determination of anterior/posterior axis, embryo germ cell development oocyte differentiation axis specification protein polymerization microtubule polymerization microtubule polymerization or depolymerization protein-containing complex assembly supramolecular fiber organization cell projection organization plasma membrane bounded cell projection morphogenesis neuron projection development cell morphogenesis neurogenesis cell projection morphogenesis neuron differentiation neuron projection morphogenesis dendrite development system development plasma membrane bounded cell projection organization dendrite morphogenesis nervous system development cell morphogenesis involved in neuron differentiation generation of neurons anatomical structure morphogenesis neuron development actin filament bundle organization actin cytoskeleton organization actin filament organization actin filament-based process muscle structure development somatic muscle development larval somatic muscle development larval development post-embryonic development ovarian nurse cell to oocyte transport pole plasm oskar mRNA localization RNA localization pole plasm mRNA localization pole plasm RNA localization intracellular mRNA localization involved in anterior/posterior axis specification intracellular mRNA localization intracellular mRNA localization involved in pattern specification process macromolecule localization axonogenesis axon development organelle transport along microtubule mitochondrion transport along microtubule axonal transport of mitochondrion anterograde axonal transport establishment of mitochondrion localization anterograde axonal transport of mitochondrion axonal transport establishment of mitochondrion localization, microtubule-mediated behavior locomotory behavior larval behavior larval locomotory behavior cellular component assembly involved in morphogenesis egg chorion assembly cellular anatomical entity morphogenesis anatomical structure formation involved in morphogenesis dorsal appendage formation external encapsulating structure organization axon guidance neuron projection guidance anterograde dendritic transport dendritic transport sensory organ development photoreceptor cell differentiation visual system development eye morphogenesis eye photoreceptor cell differentiation animal organ morphogenesis sensory system development eye development animal organ development sensory organ morphogenesis microtubule sliding establishment or maintenance of cell polarity establishment or maintenance of microtubule cytoskeleton polarity establishment or maintenance of cytoskeleton polarity oocyte microtubule cytoskeleton polarization oocyte microtubule cytoskeleton organization regulation of localization regulation of biological process regulation of intracellular mRNA localization regulation of pole plasm oskar mRNA localization biological regulation anterograde dendritic transport of neurotransmitter receptor complex receptor localization to synapse oocyte dorsal/ventral axis specification dorsal/ventral axis specification dorsal/ventral pattern formation heart development circulatory system development organelle assembly motile cilium assembly plasma membrane bounded cell projection assembly cilium assembly cilium organization cell projection assembly embryo development ending in birth or egg hatching chordate embryonic development in utero embryonic development cilium movement import into cell positive regulation of cellular component organization regulation of cellular process regulation of cellular component organization positive regulation of biological process vesicle-mediated transport positive regulation of endocytosis positive regulation of receptor-mediated endocytosis positive regulation of cellular process regulation of endocytosis regulation of transport regulation of receptor-mediated endocytosis regulation of vesicle-mediated transport positive regulation of transport endocytosis receptor-mediated endocytosis inner ear receptor cell development inner ear development mechanoreceptor differentiation ear development inner ear receptor cell differentiation inner ear receptor cell stereocilium organization epithelium development neural tube development tube development tissue development dorsal/ventral neural tube patterning neural tube patterning intracellular protein localization protein localization to cell junction kidney development renal system development microtubule anchoring at microtubule organizing center microtubule anchoring at centrosome microtubule anchoring establishment of protein localization regulation of protein localization positive regulation of establishment of protein localization positive regulation of protein transport positive regulation of intracellular transport regulation of intracellular transport regulation of establishment of protein localization regulation of protein transport protein transport regulation of cellular localization positive regulation of protein localization regulation of intracellular protein transport positive regulation of intracellular protein transport intracellular protein transport heart morphogenesis embryonic heart tube development tube morphogenesis embryonic heart tube morphogenesis heart looping determination of bilateral symmetry epithelial tube morphogenesis embryonic organ development determination of left/right symmetry specification of symmetry embryonic organ morphogenesis embryonic morphogenesis morphogenesis of an epithelium determination of heart left/right asymmetry tissue morphogenesis left/right pattern formation protein transport along microtubule microtubule-based protein transport regulation of axo-dendritic protein transport positive regulation of axo-dendritic protein transport regulation of microtubule-based process axo-dendritic protein transport regulation of microtubule-based movement cellular response to stimulus cell surface receptor signaling pathway response to stimulus signaling smoothened signaling pathway cell communication signal transduction regulation of establishment or maintenance of cell polarity regulation of developmental process establishment or maintenance of cell polarity regulating cell shape regulation of cell shape regulation of establishment or maintenance of cell polarity regulating cell shape regulation of cell morphogenesis positive regulation of establishment or maintenance of cell polarity regulating cell shape regulation of biological quality regulation of anatomical structure morphogenesis epidermis development epidermal stem cell homeostasis multicellular organismal-level homeostasis homeostatic process homeostasis of number of cells cell population proliferation positive regulation of cell population proliferation positive regulation of epithelial cell proliferation regulation of cell population proliferation regulation of epithelial cell proliferation epithelial cell proliferation non-motile cilium assembly head development forebrain development brain development central nervous system development neural precursor cell proliferation dentate gyrus development pallium development telencephalon development hippocampus development limbic system development centriole-centriole cohesion microtubule bundle formation protein localization to microtubule cytoskeleton protein localization to cytoskeleton protein localization to organelle protein localization to microtubule organizing center protein localization to centrosome regulation of cytoskeleton organization regulation of microtubule polymerization or depolymerization negative regulation of biological process regulation of protein-containing complex assembly negative regulation of cellular process negative regulation of protein polymerization negative regulation of supramolecular fiber organization negative regulation of cellular component organization negative regulation of microtubule polymerization or depolymerization negative regulation of cytoskeleton organization negative regulation of microtubule polymerization regulation of cellular component biogenesis regulation of organelle organization negative regulation of protein-containing complex assembly negative regulation of organelle organization regulation of protein polymerization regulation of microtubule polymerization regulation of supramolecular fiber organization regulation of microtubule cytoskeleton organization mitotic metaphase chromosome alignment mitotic cell cycle metaphase chromosome alignment chromosome localization mitotic sister chromatid segregation chromosome segregation mitotic nuclear division attachment of spindle microtubules to kinetochore organelle fission attachment of mitotic spindle microtubules to kinetochore chromosome organization sister chromatid segregation nuclear division mitotic cell cycle process nuclear chromosome segregation cell division cell migration cell motility membraneless organelle assembly spindle assembly spindle organization protein localization to astral microtubule protein localization to microtubule protein localization to cytoplasmic microtubule protein localization to spindle microtubule protein localization to mitotic spindle spindle localization establishment of mitotic spindle localization establishment of spindle localization establishment of spindle orientation microtubule cytoskeleton organization involved in mitosis establishment of cell polarity establishment of mitotic spindle orientation positive regulation of organelle organization positive regulation of protein-containing complex assembly positive regulation of protein polymerization positive regulation of microtubule polymerization or depolymerization positive regulation of cellular component biogenesis positive regulation of cytoskeleton organization positive regulation of supramolecular fiber organization positive regulation of microtubule polymerization	polymeric cytoskeletal fiber intracellular anatomical structure microtubule end intracellular membraneless organelle intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle supramolecular fiber microtubule supramolecular polymer supramolecular complex microtubule plus-end polymeric cytoskeletal fiber intracellular anatomical structure microtubule end intracellular membraneless organelle intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle supramolecular fiber microtubule supramolecular polymer supramolecular complex microtubule plus-end microtubule cytoskeleton protein-containing complex microtubule associated complex kinesin complex cell cortex cortical cytoskeleton actin cytoskeleton cell periphery actin cap cortical actin cytoskeleton cytoplasm neuron projection cytoplasm neuron projection plasma membrane bounded cell projection dendrite cytoplasm somatodendritic compartment cell projection dendrite dendritic tree axon axon cytoplasm membrane-bounded organelle axoneme ciliary plasm cilium ciliary transition zone non-motile cilium 9+0 non-motile cilium photoreceptor cell cilium photoreceptor connecting cilium cytosol synapse cell junction glutamatergic synapse kinesin II complex cell body neuronal cell body postsynapse centrosome microtubule organizing center centriole motile cilium ribbon synapse anchoring junction focal adhesion cell-substrate junction spindle spindle midzone mitotic spindle aster spindle microtubule cytoplasmic microtubule mitotic spindle astral microtubule end mitotic spindle astral microtubule astral microtubule membrane plasma membrane plasma membrane region cell projection membrane Golgi apparatus intracellular membrane-bounded organelle endomembrane system cortical microtubule cytoskeleton mitotic spindle pole spindle pole ciliary basal body mitotic spindle microtubule

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036961	Kinesin motor domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR001752	Kinesin motor domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR027640	Kinesin-like protein	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR019821	Kinesin motor domain, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G, H	IPR059182	Kinesin heavy chain, C-terminal domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR001752	Kinesin motor domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR019821	Kinesin motor domain, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036961	Kinesin motor domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR027640	Kinesin-like protein	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR001715	Calponin homology domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR004953	EB1, C-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR027328	Microtubule-associated protein RP/EB	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036133	EB1, C-terminal domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036872	CH domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F, G, H	Pharos: Q15691	Weight Gain primitive neuroectodermal tumor astrocytic tumor coronary artery disease inflammatory bowel disease lymphoplasmacytic lymphoma medulloblastoma oligodendroglioma plasma cell myeloma atypical teratoid rhabdoid tumor dermatomyositis juvenile dermatomyositis malignant ependymoma myocardial ischemia osteosarcoma Weight Gain primitive neuroectodermal tumor astrocytic tumor coronary artery disease inflammatory bowel disease lymphoplasmacytic lymphoma medulloblastoma oligodendroglioma plasma cell myeloma atypical teratoid rhabdoid tumor dermatomyositis juvenile dermatomyositis malignant ependymoma myocardial ischemia osteosarcoma polycystic ovary syndrome breast carcinoma glioblastoma large cell medulloblastoma malignant glioma nicotine dependence ovarian cancer

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.