Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
A [auth W]d5l4kw_ Alpha and beta proteins (a/b) vWA-like vWA-like Integrin A (or I) domain Proteasome regulatory subunit Rpn10 (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
J [auth R]SCOP2B SuperfamilyWinged helix DNA-binding domain 8057047 3000034 SCOP2B (2022-06-29)
J [auth R]SCOP2B SuperfamilyTPR-like 8057045 3001345 SCOP2B (2022-06-29)
K [auth U]SCOP2B SuperfamilyJAB1/MPN domain-like 8053252 3001105 SCOP2B (2022-06-29)
K [auth U]SCOP2B SuperfamilyEIF3 subunit F C-terminal domain-like 8053251 3002167 SCOP2B (2022-06-29)
B [auth V]SCOP2B SuperfamilyJAB1/MPN domain-like 8053255 3001105 SCOP2B (2022-06-29)
B [auth V]SCOP2B SuperfamilyEIF3 subunit F C-terminal domain-like 8053254 3002167 SCOP2B (2022-06-29)
D [auth Y]SCOP2B SuperfamilyDSS1/SEM1 protein family 8053396 3002183 SCOP2B (2022-06-29)
I [auth Q]SCOP2B SuperfamilyWinged helix DNA-binding domain 8067905 3000034 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth W]VWAe5l4kW1 A: a/b three-layered sandwichesX: HAD domain-likeH: HAD domain-relatedT: vWA-likeF: VWAECOD (1.6)
J [auth R]PCI_1e5l4kR3 A: alpha arraysX: HTHH: HTHT: wingedF: PCI_1ECOD (1.6)
J [auth R]RPN7e5l4kR1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: RPN7ECOD (1.6)
J [auth R]KOG0687e5l4kR2 A: extended segmentsX: 26S proteasome regulatory subunits C-terminal helicesH: 26S proteasome regulatory subunit RPN7 C-terminal helix (From Topology)T: 26S proteasome regulatory subunit RPN7 C-terminal helixF: KOG0687ECOD (1.6)
K [auth U]JABe5l4kU2 A: a+b three layersX: Cytidine deaminase-like (From Topology)H: Cytidine deaminase-like (From Topology)T: Cytidine deaminase-likeF: JABECOD (1.6)
K [auth U]MitMem_rege5l4kU1 A: extended segmentsX: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)H: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)T: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domainF: MitMem_regECOD (1.6)
L [auth O]PCI_1e5l4kO1 A: alpha arraysX: HTHH: HTHT: wingedF: PCI_1ECOD (1.6)
L [auth O]KOG2908_Ne5l4kO2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: KOG2908_NECOD (1.6)
L [auth O]KOG2908_Ce5l4kO3 A: extended segmentsX: 26S proteasome regulatory subunits C-terminal helicesH: 26S proteasome regulatory subunit RPN9 C-terminal helix (From Topology)T: 26S proteasome regulatory subunit RPN9 C-terminal helixF: KOG2908_CECOD (1.6)
B [auth V]JABe5l4kV2 A: a+b three layersX: Cytidine deaminase-like (From Topology)H: Cytidine deaminase-like (From Topology)T: Cytidine deaminase-likeF: JABECOD (1.6)
B [auth V]EUF08560e5l4kV1 A: extended segmentsX: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)H: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)T: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domainF: EUF08560ECOD (1.6)
C [auth T]CSN8_PSD8_EIF3K_C_2e5l4kT2 A: alpha arraysX: HTHH: HTHT: wingedF: CSN8_PSD8_EIF3K_C_2ECOD (1.6)
C [auth T]SAC3_GANP_1ste5l4kT1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: SAC3_GANP_1stECOD (1.6)
E [auth Z]KOG2005_1ste5l4kZ3 A: alpha superhelicesX: Repetitive alpha hairpinsH: 26S proteasome subunit Rpn2 N-terminal domain (From Topology)T: 26S proteasome subunit Rpn2 N-terminal domainF: KOG2005_1stECOD (1.6)
E [auth Z]KOG1858_2nde5l4kZ2 A: alpha superhelicesX: Repetitive alpha hairpinsH: Proteasome/cyclosome (PC) repeat (From Topology)T: Proteasome/cyclosome (PC) repeatF: KOG1858_2ndECOD (1.6)
F [auth N]KOG2062_2nde5l4kN3 A: beta sandwichesX: 26S proteasome subunit Rpn2 C-terminal domain (From Topology)H: 26S proteasome subunit Rpn2 C-terminal domain (From Topology)T: 26S proteasome subunit Rpn2 C-terminal domainF: KOG2062_2ndECOD (1.6)
F [auth N]KOG2062_1ste5l4kN1 A: alpha superhelicesX: Repetitive alpha hairpinsH: 26S proteasome subunit Rpn2 N-terminal domain (From Topology)T: 26S proteasome subunit Rpn2 N-terminal domainF: KOG2062_1stECOD (1.6)
F [auth N]HEAT_2_3e5l4kN2 A: alpha superhelicesX: Repetitive alpha hairpinsH: Proteasome/cyclosome (PC) repeat (From Topology)T: Proteasome/cyclosome (PC) repeatF: HEAT_2_3ECOD (1.6)
G [auth S]PCIe5l4kS2 A: alpha arraysX: HTHH: HTHT: wingedF: PCIECOD (1.6)
G [auth S]KOG2581e5l4kS1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: KOG2581ECOD (1.6)
G [auth S]Rpn3_Ce5l4kS3 A: extended segmentsX: 26S proteasome regulatory subunits C-terminal helicesH: 26S proteasome regulatory subunit RPN3 C-terminal helix (From Topology)T: 26S proteasome regulatory subunit RPN3 C-terminal helixF: Rpn3_CECOD (1.6)
H [auth P]PCIe5l4kP3 A: alpha arraysX: HTHH: HTHT: wingedF: PCIECOD (1.6)
H [auth P]RPN7_1e5l4kP2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: RPN7_1ECOD (1.6)
H [auth P]KOG1498e5l4kP1 A: extended segmentsX: 26S proteasome regulatory subunits C-terminal helicesH: 26S proteasome regulatory subunit RPN5 C-terminal helix (From Topology)T: 26S proteasome regulatory subunit RPN5 C-terminal helixF: KOG1498ECOD (1.6)
I [auth Q]PCIe5l4kQ1 A: alpha arraysX: HTHH: HTHT: wingedF: PCIECOD (1.6)
I [auth Q]KOG1463e5l4kQ3 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: KOG1463ECOD (1.6)
I [auth Q]RPN6_likee5l4kQ2 A: extended segmentsX: 26S proteasome regulatory subunits C-terminal helicesH: 26S proteasome regulatory subunit RPN6 C-termial helix (From Topology)T: 26S proteasome regulatory subunit RPN6 C-termial helixF: RPN6_likeECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth W]PF13519von Willebrand factor type A domain (VWA_2)von Willebrand factor type A domain- Domain
J [auth R]PF2115426S proteasome regulatory subunit RPN7/PSMD6 C-terminal helix (RPN7_PSMD6_C)26S proteasome regulatory subunit RPN7/PSMD6 C-terminal helixRPN7/PSDM6 are regulatory subunits from the 26S proteasome. This entry represents the C-terminal helix.Domain
J [auth R]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1].Domain
J [auth R]PF1060226S proteasome subunit RPN7 (RPN7)26S proteasome subunit RPN7- Repeat
K [auth U]PF13012Maintenance of mitochondrial structure and function (MitMem_reg)Maintenance of mitochondrial structure and function- Family
K [auth U]PF01398JAB1/Mov34/MPN/PAD-1 ubiquitin protease (JAB)JAB1/Mov34/MPN/PAD-1 ubiquitin protease- Family
L [auth O]PF22037PSD13 N-terminal repeats (PSD13_N)PSD13 N-terminal repeats- Repeat
L [auth O]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1].Domain
B [auth V]PF01398JAB1/Mov34/MPN/PAD-1 ubiquitin protease (JAB)JAB1/Mov34/MPN/PAD-1 ubiquitin protease- Family
C [auth T]PF10075CSN8/PSMD8/EIF3K family (CSN8_PSD8_EIF3K)CSN8/PSMD8/EIF3K family- Family
E [auth Z]PF17781RPN1 N-terminal domain (RPN1_RPN2_N)RPN1 N-terminal domainThis domain is found at the N-terminus of the 26S proteasome regulatory subunits RPN1 (also known as 26S proteasome non-ATPase regulatory subunit 2 (PMSD2)[1]. The domain is formed by an array of alpha helices [2].Domain
E [auth Z]PF01851Proteasome/cyclosome repeat (PC_rep)Proteasome/cyclosome repeat- Repeat
E [auth Z]PF1805126S proteasome non-ATPase regulatory subunit RPN1 C-terminal (RPN1_C)26S proteasome non-ATPase regulatory subunit RPN1 C-terminalThis is the C-terminal domain found in RPN1 proteins (26S proteasome non-ATPase regulatory subunit 2). The 26S proteasome holocomplex consists of a 28-subunit barrel-shaped core particle (CP) in the center capped at the top and bottom by 19-subunit ...This is the C-terminal domain found in RPN1 proteins (26S proteasome non-ATPase regulatory subunit 2). The 26S proteasome holocomplex consists of a 28-subunit barrel-shaped core particle (CP) in the center capped at the top and bottom by 19-subunit regulatory particles (RPs). The CP forms the catalytic chamber and the RP is formed from two subcomplexes known as the lid and the base [1]. The lid comprises nine Rpn subunits in yeast (Rpn3/5/6/7/8/9/11/12/15) and the base comprises three Rpn subunits (Rpn1/2/13) and six ATPases (Rpt1-6) [2].
Domain
F [auth N]PF13646HEAT repeats (HEAT_2)HEAT repeats- Repeat
F [auth N]PF1800426S proteasome regulatory subunit RPN2 C-terminal domain (RPN2_C)26S proteasome regulatory subunit RPN2 C-terminal domainThis is the C-terminal domain found in S. cerevisiae Rpn2 (26S proteasome regulatory subunit RPN2) as well as other eukaryotic species. A study revealed that the C-terminal 52 residues of the Rpn2 C-terminal domain are responsible for mediating inter ...This is the C-terminal domain found in S. cerevisiae Rpn2 (26S proteasome regulatory subunit RPN2) as well as other eukaryotic species. A study revealed that the C-terminal 52 residues of the Rpn2 C-terminal domain are responsible for mediating interactions with the ubiquitin-binding subunit Rpn13. Futhermore, the extreme C-terminal 20 or 21 residues of Rpn2 (926-945 or 925-945) of S. cerevisiae, were shown to be equally effective at binding Rpn13. Multiple sequence alignments indicate that Rpn2 orthologs are highly conserved in this C-terminal region and share characteristic acidic, aromatic, and proline residues, suggesting a common function. In the structure of Rpn2 from S. cerevisiae , this region is exposed and disordered, and is thus accessible for associating with Rpn13. The Rpn2 binding surface of human Rpn13 has been mapped by nuclear magnetic resonance titration to one surface of its Pru domain [1].
Domain
F [auth N]PF2150526S proteasome subunit RPN2, N-terminal domain (RPN2_N)26S proteasome subunit RPN2, N-terminal domainThis entry represents the N-terminal helical domain of 26S proteasome regulatory subunit RPN2 and 26S proteasome non-ATPase regulatory subunit 1 (PSMD1). It adopts a rod-like structure [1-5].Domain
F [auth N]PF01851Proteasome/cyclosome repeat (PC_rep)Proteasome/cyclosome repeat- Repeat
G [auth S]PF08375Proteasome regulatory subunit C-terminal (Rpn3_C)Proteasome regulatory subunit C-terminal- Family
G [auth S]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1].Domain
H [auth P]PF1809826S proteasome regulatory subunit RPN5 C-terminal domain (RPN5_C)26S proteasome regulatory subunit RPN5 C-terminal domainThis is the C-terminal domain of the 26S proteasome regulatory subunit RPN5 proteins.This helical domain can be found adjacent to Pfam:PF01399. The 26S proteasome is the major ATP-dependent protease in eukaryotes. Three subcomplexes form this degrada ...This is the C-terminal domain of the 26S proteasome regulatory subunit RPN5 proteins.This helical domain can be found adjacent to Pfam:PF01399. The 26S proteasome is the major ATP-dependent protease in eukaryotes. Three subcomplexes form this degradation machine: the lid, the base, and the core. The helices found at the C terminus of each lid subunit form a helical bundle that directs the ordered self-assembly of the lid subcomplex. This domain which comprises the tail of RPN5 along with the tail of Rpn9, are important for Rpn12 binding to the lid [1].
Domain
H [auth P]PF22241PSMD12/CSN4, N-terminal (PSMD12-CSN4_N)PSMD12/CSN4, N-terminal- Repeat
H [auth P]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1].Domain
I [auth Q]PF1805526S proteasome regulatory subunit RPN6 N-terminal domain (RPN6_N)26S proteasome regulatory subunit RPN6 N-terminal domain- Repeat
I [auth Q]PF1850326S proteasome subunit RPN6 C-terminal helix domain (RPN6_C_helix)26S proteasome subunit RPN6 C-terminal helix domainThis is the C-terminal helix domain found in RPN6, a component of the 26S proteasome. The C-terminal helices are essential for lid assembly [1, 2].Domain
I [auth Q]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1].Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth W]26S proteasome non-ATPase regulatory subunit 4
J [auth R]26S proteasome non-ATPase regulatory subunit 6-
K [auth U]26S proteasome non-ATPase regulatory subunit 7
L [auth O]26S proteasome non-ATPase regulatory subunit 13
B [auth V]26S proteasome non-ATPase regulatory subunit 14
C [auth T]26S proteasome non-ATPase regulatory subunit 8-
D [auth Y]26S proteasome complex subunit DSS1-
E [auth Z]26S proteasome non-ATPase regulatory subunit 2
F [auth N]26S proteasome non-ATPase regulatory subunit 1
G [auth S]26S proteasome non-ATPase regulatory subunit 3
H [auth P]26S proteasome non-ATPase regulatory subunit 12-
I [auth Q]26S proteasome non-ATPase regulatory subunit 11

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth W]IPR036465von Willebrand factor A-like domain superfamilyHomologous Superfamily
A [auth W]IPR002035von Willebrand factor, type ADomain
A [auth W]IPR003903Ubiquitin interacting motifConserved Site
A [auth W]IPR049590PSMD4, RAZUL domainDomain
J [auth R]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
J [auth R]IPR01958526S proteasome regulatory subunit Rpn7/COP9 signalosome complex subunit 1Family
J [auth R]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
J [auth R]IPR04954926S proteasome regulatory subunit RPN7/PSMD6, C-terminal helixDomain
J [auth R]IPR000717Proteasome component (PCI) domainDomain
J [auth R]IPR04513526S proteasome regulatory subunit Rpn7, N-terminalDomain
K [auth U]IPR03385826S Proteasome non-ATPase regulatory subunit 7/8Family
K [auth U]IPR024969EIF3F/CSN6-like, C-terminalDomain
K [auth U]IPR037518MPN domainDomain
K [auth U]IPR000555JAB1/MPN/MOV34 metalloenzyme domainDomain
L [auth O]IPR054179PSD13, N-terminalDomain
L [auth O]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
L [auth O]IPR03529826S Proteasome non-ATPase regulatory subunit 13Family
L [auth O]IPR000717Proteasome component (PCI) domainDomain
B [auth V]IPR050242JAMM/MPN+ metalloenzymes, peptidase M67AFamily
B [auth V]IPR037518MPN domainDomain
B [auth V]IPR000555JAB1/MPN/MOV34 metalloenzyme domainDomain
C [auth T]IPR000717Proteasome component (PCI) domainDomain
C [auth T]IPR00674626S proteasome non-ATPase regulatory subunit Rpn12Family
C [auth T]IPR033464CSN8/PSMD8/EIF3KDomain
D [auth Y]IPR007834DSS1/SEM1Family
E [auth Z]IPR04143326S proteasome non-ATPase regulatory subunit RPN1, C-terminalDomain
E [auth Z]IPR016024Armadillo-type foldHomologous Superfamily
E [auth Z]IPR002015Proteasome/cyclosome repeatRepeat
E [auth Z]IPR01664326S proteasome regulatory complex, non-ATPase subcomplex, Rpn1 subunitFamily
E [auth Z]IPR011989Armadillo-like helicalHomologous Superfamily
E [auth Z]IPR040892RPN1, N-terminalDomain
F [auth N]IPR04062326S proteasome regulatory subunit RPN2, C-terminalDomain
F [auth N]IPR016024Armadillo-type foldHomologous Superfamily
F [auth N]IPR002015Proteasome/cyclosome repeatRepeat
F [auth N]IPR011989Armadillo-like helicalHomologous Superfamily
F [auth N]IPR04857026S proteasome non-ATPase regulatory subunit 1/RPN2, N-terminal domainDomain
F [auth N]IPR01664226S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunitFamily
G [auth S]IPR01358626S proteasome regulatory subunit, C-terminalDomain
G [auth S]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
G [auth S]IPR050756COP9 signalosome complex subunit 3Family
G [auth S]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
G [auth S]IPR000717Proteasome component (PCI) domainDomain
H [auth P]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
H [auth P]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
H [auth P]IPR000717Proteasome component (PCI) domainDomain
H [auth P]IPR04089626S proteasome regulatory subunit RPN5, C-terminal domainDomain
H [auth P]IPR04013426S Proteasome non-ATPase regulatory subunit 12/COP9 signalosome complex subunit 4Family
I [auth Q]IPR05087126S Proteasome and COP9 Signalosome ComponentsFamily
I [auth Q]IPR0407806S proteasome subunit Rpn6, C-terminal helix domainDomain
I [auth Q]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
I [auth Q]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
I [auth Q]IPR04077326S proteasome regulatory subunit Rpn6, N-terminalDomain
I [auth Q]IPR000717Proteasome component (PCI) domainDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A [auth W]PharosP55036
J [auth R]PharosQ15008
K [auth U]PharosP51665
L [auth O]PharosQ9UNM6
B [auth V]PharosO00487
C [auth T]PharosP48556
D [auth Y]PharosP60896
E [auth Z]PharosQ13200
F [auth N]PharosQ99460
G [auth S]PharosO43242
H [auth P]PharosO00232
I [auth Q]PharosO00231