5M5E
Crystal structure of a interleukin-2 variant in complex with interleukin-2 receptor
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | d5m5eb1 | All beta proteins | Immunoglobulin-like beta-sandwich | Fibronectin type III | Fibronectin type III | Interleukin-2 receptor beta chain | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B [auth C] | d5m5ec1 | All beta proteins | Immunoglobulin-like beta-sandwich | Fibronectin type III | Fibronectin type III | Cytokine receptor common gamma chain | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
C [auth D] | d5m5ed_ | All alpha proteins | 4-helical cytokines | 4-helical cytokines | Short-chain cytokines | automated matches | (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth B] | SCOP2B Superfamily | Fibronectin type III | 8055545 | 3002063 | SCOP2B (2022-06-29) |
A [auth B] | SCOP2B Superfamily | Fibronectin type III | 8055185 | 3002063 | SCOP2B (2022-06-29) |
B [auth C] | SCOP2B Superfamily | Fibronectin type III | 8055179 | 3002063 | SCOP2B (2022-06-29) |
B [auth C] | SCOP2B Superfamily | Fibronectin type III | 8055542 | 3002063 | SCOP2B (2022-06-29) |
C [auth D] | SCOP2B Superfamily | 4-helical cytokines | 8037109 | 3001717 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | EUF07686 | e5m5eB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: EUF07686 | ECOD (1.6) |
A [auth B] | fn3_6 | e5m5eB2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: fn3_6 | ECOD (1.6) |
B [auth C] | fn3_6 | e5m5eC2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: fn3_6 | ECOD (1.6) |
B [auth C] | IL6Ra-bind_1 | e5m5eC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: IL6Ra-bind_1 | ECOD (1.6) |
C [auth D] | IL2 | e5m5eD1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: 4-helical cytokines (From Topology) | T: 4-helical cytokines | F: IL2 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth B] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
B [auth C] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
C [auth D] | 1.20.1250.10 | Mainly Alpha | Up-down Bundle | Growth Hormone | Chain: A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B] | PF18707 | Interleukin-2 receptor subunit beta N-terminal domain 1 (IL2RB_N1) | Interleukin-2 receptor subunit beta N-terminal domain 1 | IL-2Rbeta is a member of the class I cytokine receptor superfamily [1]. It carries a cytokine-binding homology region, which is divided in two fibronectin type-III (FN-III) domains termed D1 and D2. Each domain contains seven beta-strands that form a ... | Domain |
B [auth C] | PF22012 | Cytokine receptor-like factor 2, domain 1 (TSLPR_D1) | Cytokine receptor-like factor 2, domain 1 | Cytokine receptor-like factor 2 also known as TSLPR is a receptor for thymic stromal lymphopoietin. It contains two ectodomains with Ig-like topology. This family represents the first of these domains. It also includes domains of interleukin-13 recep ... | Domain |
B [auth C] | PF21605 | Cytokine receptor-like factor 2-like, D2 domain (CRLF2-like_D2) | Cytokine receptor-like factor 2-like, D2 domain | CRLF2 is a receptor for thymic stromal lymphopoietin (TSLP). It forms a functional complex with TSLP and IL7R which is capable of stimulating cell proliferation through activation of STAT3 and STAT5. CRFL2 is implicated in the development of the hema ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B] | IPR003531 | Short hematopoietin receptor, family 1, conserved site | Conserved Site |
A [auth B] | IPR040951 | Interleukin-2 receptor subunit beta, N-terminal | Domain |
A [auth B] | IPR003961 | Fibronectin type III | Domain |
A [auth B] | IPR013783 | Immunoglobulin-like fold | Homologous Superfamily |
A [auth B] | IPR036116 | Fibronectin type III superfamily | Homologous Superfamily |
B [auth C] | IPR048648 | Cytokine receptor-like factor 2-like, D2 domain | Domain |
B [auth C] | IPR003531 | Short hematopoietin receptor, family 1, conserved site | Conserved Site |
B [auth C] | IPR053856 | Cytokine receptor-like factor 2-like, domain 1 | Domain |
B [auth C] | IPR003961 | Fibronectin type III | Domain |
B [auth C] | IPR013783 | Immunoglobulin-like fold | Homologous Superfamily |
B [auth C] | IPR036116 | Fibronectin type III superfamily | Homologous Superfamily |
C [auth D] | IPR000779 | Interleukin-2 | Family |
C [auth D] | IPR030477 | Interleukin-2, conserved site | Conserved Site |
C [auth D] | IPR009079 | Four-helical cytokine-like, core | Homologous Superfamily |