Annotations: 5M63

Crystal structure of group B Streptococcus type III DP2 oligosaccharide bound to Fab NVS-1-19-5

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
IMGT Antibody Annotation
SAbDab Antibody Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D [auth N]	d5m63n1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	Rabbit (Oryctolagus cuniculus ) [TaxId: 9986 ],	SCOPe (2.08)
B [auth L]	d5m63l1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	Rabbit (Oryctolagus cuniculus ) [TaxId: 9986 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth N]	ProQ	e5m63N1	A: alpha arrays	X: POZ domain	H: POZ domain	T: POZ domain	F: ProQ	ECOD (v295.2)
B [auth L]	ProQ	e5m63L1	A: alpha arrays	X: POZ domain	H: POZ domain	T: POZ domain	F: ProQ	ECOD (v295.2)
C [auth M]	ProQ	e5m63M1	A: alpha arrays	X: POZ domain	H: POZ domain	T: POZ domain	F: ProQ	ECOD (v295.2)
A [auth H]	ProQ	e5m63H1	A: alpha arrays	X: POZ domain	H: POZ domain	T: POZ domain	F: ProQ	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D [auth N]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
B [auth L]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
C [auth M]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
A [auth H]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)

IMGT Antibody Annotation IMGT Database Homepage

Chain	Protein Name	Description	Organism Name	Gene Allele Name(s)	Domain Name(s)	Receptor Type	Receptor Description	Provenance Source
B [auth L], D [auth N]	NVS-1-19-5 Fab	L-KAPPA	Oryctolagus cuniculus (rabbit)	IGKV1S101, IGKJ1-202, IGKJ1-201, IGKC101	V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA	IG	FAB-GAMMA-1_KAPPA	IMGT (202642-0)
A [auth H], C [auth M]	NVS-1-19-5 Fab	VH-CH1	Oryctolagus cuniculus (rabbit)	IGHV1S4001, IGHJ301, IGHJ501, IGHJ502, IGHG01, IGHG05, IGHG*02	V-DOMAIN VH, C-DOMAIN CH1	IG	FAB-GAMMA-1_KAPPA	IMGT (202642-0)

SAbDab2 Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
B [auth L], D [auth N]	Light Chain	IGKV1	Kappa	(2~{R},3~{R},4~{S},5~{S})-2-[bis(oxidanyl)methyl]-5-(hydroxymethyl)oxolane-3,4-diol \| 1,2-ETHANEDIOL \| N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose \| N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-[beta-D-galactopyranose-(1-4)-beta-D-glucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose	SAbDab (2026-10-30)
A [auth H], C [auth M]	Heavy Chain	IGHV1	-	(2~{R},3~{R},4~{S},5~{S})-2-[bis(oxidanyl)methyl]-5-(hydroxymethyl)oxolane-3,4-diol \| 1,2-ETHANEDIOL \| N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose \| N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-[beta-D-galactopyranose-(1-4)-beta-D-glucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose	SAbDab (2026-10-30)