5MRR
Crystal structure of L1 protease of Lysobacter sp. XL1
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d5mrra_ | All beta proteins | Trypsin-like serine proteases | Trypsin-like serine proteases | automated matches | automated matches | (Lysobacter sp. XL1 ) [TaxId: 186334 ], | SCOPe (2.08) |
B | d5mrrb_ | All beta proteins | Trypsin-like serine proteases | Trypsin-like serine proteases | automated matches | automated matches | (Lysobacter sp. XL1 ) [TaxId: 186334 ], | SCOPe (2.08) |
C | d5mrrc_ | All beta proteins | Trypsin-like serine proteases | Trypsin-like serine proteases | automated matches | automated matches | (Lysobacter sp. XL1 ) [TaxId: 186334 ], | SCOPe (2.08) |
D | d5mrrd_ | All beta proteins | Trypsin-like serine proteases | Trypsin-like serine proteases | automated matches | automated matches | (Lysobacter sp. XL1 ) [TaxId: 186334 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Prokaryotic proteases | 8069688 | 4002151 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Trypsin-like serine proteases | 8069689 | 3000114 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Trypsin-like serine proteases | 8069689 | 3000114 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Trypsin-like serine proteases | 8069689 | 3000114 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Trypsin-like serine proteases | 8069689 | 3000114 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Trypsin_3 | e5mrrA1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel 2 | F: Trypsin_3 | ECOD (1.6) |
B | Trypsin_3 | e5mrrB1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel 2 | F: Trypsin_3 | ECOD (1.6) |
C | Trypsin_3 | e5mrrC1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel 2 | F: Trypsin_3 | ECOD (1.6) |
D | Trypsin_3 | e5mrrD1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel 2 | F: Trypsin_3 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.40.10.10 | Mainly Beta | Beta Barrel | Thrombin, subunit H | Trypsin-like serine proteases | CATH (4.3.0) |
B | 2.40.10.10 | Mainly Beta | Beta Barrel | Thrombin, subunit H | Trypsin-like serine proteases | CATH (4.3.0) |
C | 2.40.10.10 | Mainly Beta | Beta Barrel | Thrombin, subunit H | Trypsin-like serine proteases | CATH (4.3.0) |
D | 2.40.10.10 | Mainly Beta | Beta Barrel | Thrombin, subunit H | Trypsin-like serine proteases | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Lytic endopeptidase preproenzyme |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001254 | Serine proteases, trypsin domain | Domain | |
IPR009003 | Peptidase S1, PA clan | Homologous Superfamily | |
IPR035070 | Streptogrisin prodomain | Homologous Superfamily | |
IPR004236 | Peptidase S1A, alpha-lytic prodomain | Domain | |
IPR037295 | Alpha-lytic protease prodomain | Homologous Superfamily | |
IPR001316 | Peptidase S1A, streptogrisin | Family | |
IPR043504 | Peptidase S1, PA clan, chymotrypsin-like fold | Homologous Superfamily |