Annotations: 5N6R

Solution structure of the Dbl-homology domain of Bcr-Abl

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e5n6rA1	A: alpha arrays	X: Cryptochrome/photolyase FAD-binding domain-related	H: Cryptochrome/photolyase FAD-binding domain-related	T: Undecaprenyl diphosphate synthase	F:	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00621	RhoGEF domain (RhoGEF)	RhoGEF domain	Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that Pfam:PF00169 domains invariably occur C-terminal to RhoGEF/DH domains.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Breakpoint cluster region protein	GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity catalytic activity protein serine kinase activity phosphotransferase activity, alcohol group as acceptor GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity catalytic activity protein serine kinase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups protein tyrosine kinase activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding protein serine/threonine kinase activity guanyl-nucleotide exchange factor activity	developmental process epithelium development epidermal cell differentiation cellular developmental process epidermis development animal organ development tissue development epithelial cell differentiation skin development cell differentiation keratinocyte differentiation anatomical structure development cellular process animal gross anatomical part developmental process developmental process epithelium development epidermal cell differentiation cellular developmental process epidermis development animal organ development tissue development epithelial cell differentiation skin development cell differentiation keratinocyte differentiation anatomical structure development cellular process animal gross anatomical part developmental process regulation of vascular permeability multicellular organismal process system process circulatory system process biological regulation vascular process in circulatory system regulation of biological quality blood circulation negative regulation of tissue remodeling regulation of biological process regulation of developmental process negative regulation of developmental process negative regulation of biological process regulation of tissue remodeling regulation of blood vessel remodeling anatomical structure morphogenesis blood vessel remodeling negative regulation of blood vessel remodeling tissue remodeling regulation of multicellular organismal process negative regulation of multicellular organismal process regulation of anatomical structure morphogenesis cellular response to stimulus regulation of cellular process response to stimulus signaling signal transduction cell communication regulation of signaling small GTPase-mediated signal transduction regulation of small GTPase mediated signal transduction regulation of signal transduction regulation of Rho protein signal transduction intracellular signal transduction Rho protein signal transduction regulation of intracellular signal transduction regulation of response to stimulus intracellular signaling cassette regulation of cell communication trans-synaptic signaling modulation of chemical synaptic transmission cell-cell signaling chemical synaptic transmission synaptic signaling regulation of trans-synaptic signaling anterograde trans-synaptic signaling negative regulation of locomotion regulation of cell motility negative regulation of cellular extravasation negative regulation of cellular process regulation of cell migration cellular extravasation cell migration regulation of immune system process cell motility negative regulation of cell migration locomotion regulation of leukocyte migration leukocyte migration negative regulation of leukocyte migration negative regulation of immune system process immune system process regulation of locomotion negative regulation of cell motility regulation of cellular extravasation protein phosphorylation phosphorylation macromolecule modification phosphate-containing compound metabolic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process protein modification process focal adhesion assembly cell-substrate junction assembly cell-substrate adhesion cellular component organization cellular component biogenesis cell adhesion cell junction organization cellular component assembly cell-matrix adhesion cell junction assembly cell-substrate junction organization cellular component organization or biogenesis activation of GTPase activity positive regulation of molecular function regulation of molecular function positive regulation of hydrolase activity regulation of catalytic activity regulation of hydrolase activity positive regulation of catalytic activity regulation of GTPase activity positive regulation of GTPase activity	cellular anatomical structure membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol cell periphery cellular anatomical structure membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane protein-containing complex synapse cell junction glutamatergic synapse neuron spine neuron projection dendritic spine plasma membrane bounded cell projection somatodendritic compartment cell projection postsynapse dendrite dendritic tree postsynaptic density neuron to neuron synapse postsynaptic specialization asymmetric synapse Schaffer collateral - CA1 synapse axon

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR001849	Pleckstrin homology domain	Domain
A	IPR000219	Dbl homology domain	Domain
A	IPR000008	C2 domain	Domain
A	IPR011993	PH-like domain superfamily	Homologous Superfamily
A	IPR008936	Rho GTPase activation protein	Homologous Superfamily
A	IPR001331	Guanine-nucleotide dissociation stimulator, CDC24, conserved site	Conserved Site
A	IPR000198	Rho GTPase-activating protein domain	Domain
A	IPR015123	Bcr-Abl oncoprotein oligomerisation	Domain
A	IPR037769	Abr/Bcr	Family
A	IPR035892	C2 domain superfamily	Homologous Superfamily
A	IPR035899	Dbl homology (DH) domain superfamily	Homologous Superfamily
A	IPR036481	Bcr-Abl oncoprotein oligomerisation domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	: P11274	chronic myelogenous leukemia, BCR-ABL1 positive chromosome 22q11.2 deletion syndrome, distal blast phase chronic myelogenous leukemia, BCR-ABL1 positive Neoplasms, Experimental bone marrow neoplasm pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia psoriasis acute T cell leukemia bladder transitional cell carcinoma Burkitt lymphoma leukemia myeloproliferative neoplasm osteosarcoma subependymal giant cell astrocytoma atypical teratoid rhabdoid tumor chronic myelogenous leukemia, BCR-ABL1 positive chromosome 22q11.2 deletion syndrome, distal blast phase chronic myelogenous leukemia, BCR-ABL1 positive Neoplasms, Experimental bone marrow neoplasm pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia psoriasis acute T cell leukemia bladder transitional cell carcinoma Burkitt lymphoma leukemia myeloproliferative neoplasm osteosarcoma subependymal giant cell astrocytoma atypical teratoid rhabdoid tumor cancer leukemia, acute lymphocytic, susceptibility to, 1 major depressive disorder ovarian cancer bipolar disorder childhood acute lymphoblastic leukemia large cell medulloblastoma

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.