5NC6 | pdb_00005nc6

Crystal structure of the polysaccharide deacetylase Bc1974 from Bacillus cereus in complex with (E)-N-hydroxy-3-(naphthalen-1-yl)prop-2-enamide

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Glycoside hydrolase/deacetylase	8067832	3001025	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Glycoside hydrolase/deacetylase	8067832	3001025	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Glycoside hydrolase/deacetylase	8067832	3001025	SCOP2B (2022-06-29)
A	SCOP2 Family	NodB-like	8067831	4000448	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Glycoside hydrolase/deacetylase	8067832	3001025	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	PilO	e5nc6D1	A: alpha bundles	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: PilO	ECOD (develop294)
C	PilO	e5nc6C1	A: alpha bundles	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: PilO	ECOD (develop294)
B	PilO	e5nc6B1	A: alpha bundles	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: PilO	ECOD (develop294)
A	PilO	e5nc6A1	A: alpha bundles	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: PilO	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF01522	Polysaccharide deacetylase (Polysacc_deac_1)	Polysaccharide deacetylase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, C, D	Peptidoglycan N-acetylglucosamine deacetylase	hydrolase activity catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds cation binding ion binding binding metal ion binding small molecule binding	carbohydrate metabolic process primary metabolic process metabolic process cellular process	cell periphery cellular anatomical structure plasma membrane membrane
A	Peptidoglycan N-acetylglucosamine deacetylase	hydrolase activity catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds cation binding ion binding binding metal ion binding small molecule binding	carbohydrate metabolic process primary metabolic process metabolic process cellular process	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, C, D	IPR011330	Glycoside hydrolase/deacetylase, beta/alpha-barrel	Homologous Superfamily
B, C, D	IPR054858	Peptidoglycan-N-acetylglucosamine deacetylase BC_1974	Family
B, C, D	IPR050248	Polysaccharide deacetylase, ArnD subfamily	Family
B, C, D	IPR002509	NodB homology domain	Domain
A	IPR011330	Glycoside hydrolase/deacetylase, beta/alpha-barrel	Homologous Superfamily
A	IPR054858	Peptidoglycan-N-acetylglucosamine deacetylase BC_1974	Family
A	IPR050248	Polysaccharide deacetylase, ArnD subfamily	Family
A	IPR002509	NodB homology domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.