5ONU | pdb_00005onu

Trimeric OmpU structure

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Cd5onuc1 Membrane and cell surface proteins and peptides Transmembrane beta-barrels Porins automated matches automated matches (Vibrio cholerae ) [TaxId: 666 ], SCOPe (2.08)
Cd5onuc2 Artifacts Tags Tags Tags C-terminal Tags (Vibrio cholerae ) [TaxId: 666 ], SCOPe (2.08)
Bd5onub1 Membrane and cell surface proteins and peptides Transmembrane beta-barrels Porins automated matches automated matches (Vibrio cholerae ) [TaxId: 666 ], SCOPe (2.08)
Bd5onub2 Artifacts Tags Tags Tags C-terminal Tags (Vibrio cholerae ) [TaxId: 666 ], SCOPe (2.08)
Ad5onua1 Membrane and cell surface proteins and peptides Transmembrane beta-barrels Porins automated matches automated matches (Vibrio cholerae ) [TaxId: 666 ], SCOPe (2.08)
Ad5onua2 Artifacts Tags Tags Tags C-terminal Tags (Vibrio cholerae ) [TaxId: 666 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
CSBP_bac_1e5onuC1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: SBP_bac_1ECOD (develop294)
BSBP_bac_1e5onuB1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: SBP_bac_1ECOD (develop294)
AYceIe5onuA1 A: alpha bundlesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF: YceIECOD (develop294)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C
Outer membrane protein OmpU

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C
IPR050298Gram-negative bacterial outer membrane porinFamily
A, B, C
IPR033900Porin domain, Gram-negative typeDomain
A, B, C
IPR023614Porin domain superfamilyHomologous Superfamily

Membrane Protein Annotation: OPM OPM Database Homepage

ChainsExternal LinkTypeClassSuperfamilyFamily
A, B, C
OPMTransmembraneBeta-barrel transmembraneTrimeric porins (n=16,S=20)General Bacterial Porin (GBP)

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
A, B, C
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

ChainsExternal LinkComment
A, B, C
MemProtMDAnnotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

ChainsResource LinkGroupSubgroupProtein
A, B, C
mpstrucTRANSMEMBRANE PROTEINS: BETA-BARRELBeta-Barrel Membrane Proteins: Porins and RelativesOmpU