5T5K
Structure of histone-based chromatin in Archaea
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Core histone-like | 8058011 | 3001387 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Core histone-like | 8058011 | 3001387 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Core histone-like | 8058011 | 3001387 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Core histone-like | 8058011 | 3001387 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Core histone-like | 8058011 | 3001387 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Core histone-like | 8058011 | 3001387 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | CBFD_NFYB_HMF | e5t5kA1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: CBFD_NFYB_HMF | ECOD (1.6) |
B | CBFD_NFYB_HMF | e5t5kB1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: CBFD_NFYB_HMF | ECOD (1.6) |
C | CBFD_NFYB_HMF | e5t5kC1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: CBFD_NFYB_HMF | ECOD (1.6) |
D | CBFD_NFYB_HMF | e5t5kD1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: CBFD_NFYB_HMF | ECOD (1.6) |
E | CBFD_NFYB_HMF | e5t5kE1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: CBFD_NFYB_HMF | ECOD (1.6) |
F | CBFD_NFYB_HMF | e5t5kF1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: CBFD_NFYB_HMF | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.20.10 | Mainly Alpha | Orthogonal Bundle | Histone, subunit A | Histone, subunit A | CATH (4.3.0) |
B | 1.10.20.10 | Mainly Alpha | Orthogonal Bundle | Histone, subunit A | Histone, subunit A | CATH (4.3.0) |
C | 1.10.20.10 | Mainly Alpha | Orthogonal Bundle | Histone, subunit A | Histone, subunit A | CATH (4.3.0) |
D | 1.10.20.10 | Mainly Alpha | Orthogonal Bundle | Histone, subunit A | Histone, subunit A | CATH (4.3.0) |
E | 1.10.20.10 | Mainly Alpha | Orthogonal Bundle | Histone, subunit A | Histone, subunit A | CATH (4.3.0) |
F | 1.10.20.10 | Mainly Alpha | Orthogonal Bundle | Histone, subunit A | Histone, subunit A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00808 | Histone-like transcription factor (CBF/NF-Y) and archaeal histone (CBFD_NFYB_HMF) | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | This family includes archaebacterial histones and histone like transcription factors from eukaryotes. | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
DNA-binding protein HMf-2 |
| |||
G [auth I] | DNA (90-MER) | - | - | - |
H [auth J] | DNA (90-MER) | - | - | - |