5TCP | pdb_00005tcp

Near-atomic resolution cryo-EM structure of the periplasmic domains of PrgH and PrgK


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BA [auth R]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
BA [auth R]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
DA [auth T]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
DA [auth T]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
FA [auth V]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
FA [auth V]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
G [auth 6]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
G [auth 6]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
HA [auth X]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
HA [auth X]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
I [auth 8]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
I [auth 8]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
JA [auth Z]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
JA [auth Z]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
L [auth B]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
L [auth B]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
MA [auth c]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
MA [auth c]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
OA [auth e]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
OA [auth e]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
P [auth F]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
P [auth F]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
QA [auth g]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
QA [auth g]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
R [auth H]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
R [auth H]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
SA [auth i]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
SA [auth i]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
T [auth J]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
T [auth J]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
UA [auth k]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
UA [auth k]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
X [auth N]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
X [auth N]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
Z [auth P]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
Z [auth P]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
V [auth L]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
V [auth L]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
N [auth D]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
N [auth D]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
KA [auth a]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
KA [auth a]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
E [auth 4]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
E [auth 4]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
C [auth 2]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
C [auth 2]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)
A [auth 0]SCOP2B SuperfamilyBON domain-like 8092191 3002566 SCOP2B (2022-06-29)
A [auth 0]SCOP2B SuperfamilyNRho-like 8092192 3002569 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BA [auth R]SasG_Ee5tcpR1 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
DA [auth T]SasG_Ee5tcpT1 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
FA [auth V]SasG_Ee5tcpV1 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
G [auth 6]SasG_Ee5tcp61 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
HA [auth X]SasG_Ee5tcpX1 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
I [auth 8]SasG_Ee5tcp81 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
JA [auth Z]SasG_Ee5tcpZ1 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
L [auth B]SasG_Ee5tcpB1 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
MA [auth c]SasG_Ee5tcpc1 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
OA [auth e]SasG_Ee5tcpe1 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
P [auth F]SasG_Ee5tcpF1 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
QA [auth g]SasG_Ee5tcpg1 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
R [auth H]SasG_Ee5tcpH1 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
SA [auth i]SasG_Ee5tcpi1 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
T [auth J]SasG_Ee5tcpJ1 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
UA [auth k]SasG_Ee5tcpk1 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
X [auth N]SasG_Ee5tcpN1 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
Z [auth P]SasG_Ee5tcpP1 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
V [auth L]SasG_Ee5tcpL1 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
N [auth D]SasG_Ee5tcpD1 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
KA [auth a]SasG_Ee5tcpa1 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
E [auth 4]SasG_Ee5tcp41 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
C [auth 2]SasG_Ee5tcp21 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
A [auth 0]SasG_Ee5tcp01 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
AA [auth Q]SasG_Ee5tcpQ1 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
B [auth 1]SasG_Ee5tcp11 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
CA [auth S]SasG_Ee5tcpS1 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
D [auth 3]SasG_Ee5tcp31 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
EA [auth U]SasG_Ee5tcpU1 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
F [auth 5]SasG_Ee5tcp51 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
GA [auth W]SasG_Ee5tcpW1 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
H [auth 7]SasG_Ee5tcp71 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
IA [auth Y]SasG_Ee5tcpY1 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
J [auth 9]SasG_Ee5tcp91 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
LA [auth b]SasG_Ee5tcpb1 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
NA [auth d]SasG_Ee5tcpd1 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
O [auth E]SasG_Ee5tcpE1 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
PA [auth f]SasG_Ee5tcpf1 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
RA [auth h]SasG_Ee5tcph1 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
S [auth I]SasG_Ee5tcpI1 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
TA [auth j]SasG_Ee5tcpj1 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
U [auth K]SasG_Ee5tcpK1 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
W [auth M]SasG_Ee5tcpM1 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
Y [auth O]SasG_Ee5tcpO1 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
VA [auth l]SasG_Ee5tcpl1 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
Q [auth G]SasG_Ee5tcpG1 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
M [auth C]SasG_Ee5tcpC1 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)
K [auth A]SasG_Ee5tcpA1 A: a/b three-layered sandwichesX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.1)

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR006182Flagellar M-ring, N-terminalDomain
IPR045851AMP-binding enzyme domain superfamilyHomologous Superfamily
IPR043427Lipoprotein YscJ/Flagellar M-ring proteinFamily
IPR003282Type III secretion system lipoprotein SctJFamily
IPR019029Type III secretion system, PrgH/EprH-likeFamily
IPR013387Type III secretion system, PrgH/EprHFamily