5TZN | pdb_00005tzn

Structure of the viral immunoevasin m12 (Smith) bound to the natural killer cell receptor NKR-P1B (B6)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D [auth W]	d5tznw_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
A	d5tzna1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
A	d5tzna2	Artifacts	Tags	Tags	Tags	C-terminal Tags	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D [auth W]	SCOP2B Superfamily	C-type lectin-like	8065452	3001261	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	C-type lectin-like	8065452	3001261	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C [auth G]	zf-H2C2_5	e5tznG1	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: zf-H2C2_5	ECOD (develop294)
B [auth F]	m04gp34like	e5tznF1	A: alpha bundles	X: Beta domain of coronavirus spike glycoprotein	H: HAMP domain	T: HAMP domain	F: m04gp34like	ECOD (develop294)
D [auth W]	zf-H2C2_5	e5tznW1	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: zf-H2C2_5	ECOD (develop294)
A	zf-H2C2_5	e5tznA1	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: zf-H2C2_5	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D [auth W]	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
A	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, D [auth W]	PF00059	Lectin C-type domain (Lectin_C)	Lectin C-type domain	This family includes both long and short form C-type	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth F], C [auth G]	Glycoprotein family protein m12	-	-	-
A, D [auth W]	Killer cell lectin-like receptor subfamily B member 1B allele B	binding carbohydrate binding	-	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth F], C [auth G]	IPR022022	Immune evasion protein	Family
A, D [auth W]	IPR001304	C-type lectin-like	Domain
A, D [auth W]	IPR016186	C-type lectin-like/link domain superfamily	Homologous Superfamily
A, D [auth W]	IPR033992	Natural killer cell receptor-like, C-type lectin-like domain	Domain
A, D [auth W]	IPR051527	Killer cell lectin-like receptor subfamily B	Family
A, D [auth W]	IPR016187	C-type lectin fold	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.