5UC6 | pdb_00005uc6

Structural insights into IL-1 alpha recognition by a naphthyl-modified aptamer that mimics IL-1RI Domain III

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Cytokine	8042018	3000648	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	IL1	e5uc6A1	A: beta duplicates or obligate multimers	X: beta-Trefoil (From Topology)	H: beta-Trefoil (From Topology)	T: beta-Trefoil	F: IL1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00340	Interleukin-1 / 18 (IL1)	Interleukin-1 / 18	This family includes interleukin-1 and interleukin-18.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Interleukin-1 alpha	cation binding transition metal ion binding copper ion binding ion binding binding metal ion binding small molecule binding protein binding interleukin-1 receptor binding signaling receptor binding cytokine receptor binding growth factor receptor binding molecular function activator activity molecular function regulator activity cation binding transition metal ion binding copper ion binding ion binding binding metal ion binding small molecule binding protein binding interleukin-1 receptor binding signaling receptor binding cytokine receptor binding growth factor receptor binding molecular function activator activity molecular function regulator activity cytokine activity signaling receptor regulator activity receptor ligand activity signaling receptor activator activity	sodium ion homeostasis inorganic ion homeostasis homeostatic process intracellular sodium ion homeostasis cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis cellular response to stimulus regulation of biological process regulation of cellular process sodium ion homeostasis inorganic ion homeostasis homeostatic process intracellular sodium ion homeostasis cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation response to cytokine cytokine-mediated signaling pathway cell communication response to peptide response to chemical cellular process cellular response to cytokine stimulus signal transduction positive regulation of cell communication positive regulation of signal transduction positive regulation of canonical NF-kappaB signal transduction positive regulation of biological process regulation of signal transduction intracellular signal transduction positive regulation of response to stimulus regulation of intracellular signal transduction intracellular signaling cassette positive regulation of cellular process regulation of signaling positive regulation of intracellular signal transduction canonical NF-kappaB signal transduction regulation of response to stimulus regulation of cell communication regulation of canonical NF-kappaB signal transduction positive regulation of signaling response to copper ion response to metal ion negative regulation of extrinsic apoptotic signaling pathway in absence of ligand signal transduction in absence of ligand negative regulation of signaling negative regulation of biological process regulation of programmed cell death negative regulation of cell communication extrinsic apoptotic signaling pathway negative regulation of signal transduction in absence of ligand negative regulation of extrinsic apoptotic signaling pathway negative regulation of apoptotic signaling pathway negative regulation of cellular process extrinsic apoptotic signaling pathway in absence of ligand negative regulation of response to stimulus negative regulation of programmed cell death regulation of apoptotic process cell death negative regulation of signal transduction regulation of extrinsic apoptotic signaling pathway apoptotic signaling pathway negative regulation of apoptotic process regulation of extrinsic apoptotic signaling pathway in absence of ligand apoptotic process programmed cell death regulation of apoptotic signaling pathway multicellular organismal process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process regulation of cytokine production cytokine production regulation of multicellular organismal process positive regulation of macromolecule metabolic process regulation of vascular endothelial growth factor production regulation of biosynthetic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression vascular endothelial growth factor production biosynthetic process positive regulation of gene expression positive regulation of multicellular organismal process positive regulation of vascular endothelial growth factor production regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process positive regulation of cytokine production regulation of metabolic process immune response immune system process interleukin-6 production positive regulation of interleukin-6 production regulation of interleukin-6 production cellular response to heat cellular response to stress response to stress response to heat response to abiotic stimulus response to temperature stimulus wound healing connective tissue replacement involved in inflammatory response wound healing wound healing involved in inflammatory response defense response inflammatory response to wounding tissue remodeling connective tissue replacement inflammatory response response to wounding biological process involved in interspecies interaction between organisms response to lipid response to other organism cellular response to lipopolysaccharide response to oxygen-containing compound response to external stimulus cellular response to molecule of bacterial origin response to lipopolysaccharide cellular response to oxygen-containing compound response to biotic stimulus cellular response to biotic stimulus cellular response to chemical stimulus response to bacterium cellular response to lipid response to external biotic stimulus response to molecule of bacterial origin fever generation acute-phase response heat generation multicellular organismal-level homeostasis temperature homeostasis acute inflammatory response positive regulation of cell division cell division regulation of cell division positive regulation of organelle organization regulation of cellular component organization positive regulation of cellular component organization regulation of mitotic nuclear division positive regulation of mitotic nuclear division mitotic cell cycle cellular component organization regulation of mitotic cell cycle positive regulation of cell cycle process cellular component organization or biogenesis cell cycle regulation of cell cycle cell cycle process mitotic nuclear division regulation of cell cycle process organelle fission positive regulation of nuclear division regulation of organelle organization positive regulation of cell cycle organelle organization nuclear division mitotic cell cycle process regulation of nuclear division regulation of localization establishment of protein localization nitrogen compound transport regulation of protein localization transport positive regulation of establishment of protein localization positive regulation of secretion by cell protein localization to extracellular region positive regulation of protein transport localization regulation of secretion by cell secretion by cell positive regulation of secretion intracellular protein localization regulation of transport secretion regulation of establishment of protein localization establishment of protein localization to extracellular region export from cell regulation of protein transport protein secretion establishment of localization positive regulation of protein secretion regulation of protein secretion regulation of secretion positive regulation of transport protein transport macromolecule localization positive regulation of protein localization negative regulation of cell population proliferation cell population proliferation regulation of cell population proliferation regulation of developmental process angiogenesis regulation of vasculature development positive regulation of developmental process multicellular organism development tube morphogenesis anatomical structure development regulation of anatomical structure morphogenesis blood vessel development system development developmental process regulation of multicellular organismal development blood vessel morphogenesis tube development positive regulation of angiogenesis vasculature development circulatory system development anatomical structure morphogenesis positive regulation of vasculature development regulation of angiogenesis anatomical structure formation involved in morphogenesis regulation of interleukin-2 production interleukin-2 production positive regulation of interleukin-2 production regulation of MAPK cascade MAPK cascade ERK1 and ERK2 cascade regulation of ERK1 and ERK2 cascade cellular developmental process reproductive process cell development developmental process involved in reproduction programmed cell death involved in cell development cell differentiation ectopic germ cell programmed cell death regulation of tumor necrosis factor production positive regulation of tumor necrosis factor superfamily cytokine production tumor necrosis factor superfamily cytokine production positive regulation of tumor necrosis factor production tumor necrosis factor production regulation of tumor necrosis factor superfamily cytokine production positive regulation of cell population proliferation regulation of leukocyte activation regulation of cell activation mononuclear cell differentiation lymphocyte differentiation T cell differentiation in thymus positive regulation of cell activation T cell activation lymphocyte proliferation positive regulation of leukocyte activation regulation of immature T cell proliferation regulation of immune system process T cell differentiation positive regulation of immune system process regulation of leukocyte proliferation positive regulation of T cell activation positive regulation of immature T cell proliferation positive regulation of lymphocyte proliferation regulation of immature T cell proliferation in thymus positive regulation of T cell proliferation mononuclear cell proliferation regulation of leukocyte cell-cell adhesion positive regulation of leukocyte proliferation leukocyte differentiation immature T cell proliferation in thymus positive regulation of leukocyte cell-cell adhesion lymphocyte activation leukocyte proliferation leukocyte cell-cell adhesion leukocyte activation positive regulation of cell-cell adhesion positive regulation of lymphocyte activation cell adhesion cell-cell adhesion positive regulation of mononuclear cell proliferation regulation of cell-cell adhesion positive regulation of immature T cell proliferation in thymus T cell proliferation regulation of lymphocyte proliferation hemopoiesis positive regulation of cell adhesion regulation of cell adhesion cell activation regulation of T cell activation immature T cell proliferation regulation of T cell proliferation regulation of mononuclear cell proliferation regulation of lymphocyte activation positive regulation of DNA-templated transcription RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II primary metabolic process positive regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process regulation of DNA-templated transcription	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol extracellular region extracellular space membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle
B	DNA (5'-D(CPG)-R(P(85Y))-D(PGPAPG)-R(P(85Y)P(85Y))-D(PA)-R(P(85Y))-D(PGPGPG)-R(P(85Y)P(85Y))-D(PAPGPAPG)-R(P(85Y))-D(PCPGP*(ATD))-3')	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR000975	Interleukin-1 family	Family
A	IPR020877	Interleukin-1 conserved site	Conserved Site
A	IPR008996	Cytokine IL1/FGF	Homologous Superfamily
A	IPR003295	Interleukin-1 alpha	Family
A	IPR003502	Interleukin-1 propeptide	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: P01583	cardiomyopathy anthracosis Leber hereditary optic neuropathy MERRF syndrome hemolytic-uremic syndrome polymyositis dermatomyositis Kearns-Sayre syndrome malignant mesothelioma MELAS syndrome mesenchymal chondrosarcoma Heat Stroke non-alcoholic fatty liver disease inborn mitochondrial myopathy skin neoplasm cardiomyopathy anthracosis Leber hereditary optic neuropathy MERRF syndrome hemolytic-uremic syndrome polymyositis dermatomyositis Kearns-Sayre syndrome malignant mesothelioma MELAS syndrome mesenchymal chondrosarcoma Heat Stroke non-alcoholic fatty liver disease inborn mitochondrial myopathy skin neoplasm HIV wasting syndrome allergic contact dermatitis progressive external ophthalmoplegia skin cancer dissociative amnesia brain ischemia chorioamnionitis skin disease ankylosing spondylitis endometriosis funisitis acne schizophrenia cutaneous lupus erythematosus juvenile dermatomyositis ulcerative colitis lung carcinoma autoimmune disease brain injury burn myocardial ischemia cancer hypotensive disorder coronary artery disease cystic fibrosis intervertebral disc degenerative disorder amnionitis diarrheal disease vitiligo drug-induced liver injury head and neck squamous cell carcinoma oligodendroglioma allergic rhinitis inflammatory bowel disease amnestic disorder depressive disorder ischemia reperfusion injury keratoconus tuberculosis lung cancer arthritic joint disease

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.