5UPQ | pdb_00005upq

Acyl-CoA synthetase PtmA2 from Streptomyces platensis in complex with SBNP465 ligand

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d5upqb_	Multi-domain proteins (alpha and beta)	Acetyl-CoA synthetase-like	Acetyl-CoA synthetase-like	automated matches	automated matches	(Streptomyces platensis subsp. rosaceus ) [TaxId: 684832 ],	SCOPe (2.08)
A	d5upqa1	Multi-domain proteins (alpha and beta)	Acetyl-CoA synthetase-like	Acetyl-CoA synthetase-like	automated matches	automated matches	(Streptomyces platensis subsp. rosaceus ) [TaxId: 684832 ],	SCOPe (2.08)
A	d5upqa2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Streptomyces platensis subsp. rosaceus ) [TaxId: 684832 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B		e5upqB1	A: helical bundle domain in reverse transcriptase-like polymerases	X: helical bundle domain in reverse transcriptase-like polymerases	H: CARF (CRISPR-associated Rossmann fold) domains	T: Cadherin	F:	ECOD (20:10:01)
A		e5upqA1	A: helical bundle domain in reverse transcriptase-like polymerases	X: helical bundle domain in reverse transcriptase-like polymerases	H: CARF (CRISPR-associated Rossmann fold) domains	T: Cadherin	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.50.12780	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	ANL, N-terminal domain	CATH (4.3.0)
B	3.30.300.30	Alpha Beta	2-Layer Sandwich	GMP Synthetase	Chain A, domain 3	CATH (4.3.0)
A	3.40.50.12780	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	ANL, N-terminal domain	CATH (4.3.0)
A	3.30.300.30	Alpha Beta	2-Layer Sandwich	GMP Synthetase	Chain A, domain 3	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Acyl-CoA synthetase PtmA2	ligase activity, forming carbon-sulfur bonds catalytic activity acid-thiol ligase activity ligase activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR042099	ANL, N-terminal domain	Homologous Superfamily
A, B	IPR050237	ATP-dependent AMP-binding enzyme	Family
A, B	IPR045851	AMP-binding enzyme domain superfamily	Homologous Superfamily
A, B	IPR025110	AMP-binding enzyme, C-terminal domain	Domain
A, B	IPR000873	AMP-dependent synthetase/ligase domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.