5V1T
Crystal structure of Streptococcus suis SuiB bound to precursor peptide SuiA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Anaerobic sulfatase maturating enzyme (anSME)-like | 8106657 | 4006068 | SCOP2 (2022-06-29) |
A | SCOP2 Family | PqqD-like | 8106659 | 4005476 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Radical SAM enzymes | 8106658 | 3000308 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Winged helix DNA-binding domain | 8106660 | 3000034 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF04055 | Radical SAM superfamily (Radical_SAM) | Radical SAM superfamily | Radical SAM proteins catalyse diverse reactions, including unusual methylations, isomerisation, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. | Domain | |
PF13186 | Iron-sulfur cluster-binding domain (SPASM) | Iron-sulfur cluster-binding domain | This domain occurs as an additional C-terminal iron-sulfur cluster binding domain in many radical SAM domain, Pfam:PF04055 proteins. The domain occurs in a number of proteins that modify a protein to become an active enzyme, or a peptide to become a ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Radical SAM | - | - | ||
SuiA 22mer | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR007197 | Radical SAM | Domain | |
IPR024017 | Petide cyclisation enzyme, radical SAM | Family | |
IPR023885 | 4Fe4S-binding SPASM domain | Domain | |
IPR006638 | Elp3/MiaA/NifB-like, radical SAM core domain | Domain | |
IPR050377 | Radical SAM PqqA peptide cyclase/Mycofactocin maturase MftC-like | Family | |
IPR013785 | Aldolase-type TIM barrel | Homologous Superfamily |