5VAU | pdb_00005vau

Bcl-2 complex with Beclin 1 BH3 domain

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e5vauA1	A: P-loop domains-like	X: Cas7-related	H: CRISPR-associated protein Cas7f/Csy3	T: F_bP_aldolase	F:	ECOD (20:10:01)
B		e5vauB1	A: P-loop domains-like	X: Cas7-related	H: CRISPR-associated protein Cas7f/Csy3	T: UDPGP	F:	ECOD (20:10:01)
C		e5vauC1	A: P-loop domains-like	X: Cas7-related	H: CRISPR-associated protein Cas7f/Csy3	T: UDPGP	F:	ECOD (20:10:01)
D		e5vauD1	A: P-loop domains-like	X: Cas7-related	H: CRISPR-associated protein Cas7f/Csy3	T: UDPGP	F:	ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF02180	Bcl-2 homology region 4 (BH4)	Bcl-2 homology region 4	-	Family
A, B, C, D	PF00452	Apoptosis regulator proteins, Bcl-2 family (Bcl-2)	Apoptosis regulator proteins, Bcl-2 family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Apoptosis regulator Bcl-2 -- Bcl-2-like protein 1 Chimera	sequence-specific DNA binding DNA binding binding nucleic acid binding death domain binding protein binding BH3 domain binding BH domain binding protein domain specific binding ubiquitin protein ligase binding ubiquitin-like protein ligase binding enzyme binding protein phosphatase binding phosphatase binding sequence-specific DNA binding DNA binding binding nucleic acid binding death domain binding protein binding BH3 domain binding BH domain binding protein domain specific binding ubiquitin protein ligase binding ubiquitin-like protein ligase binding enzyme binding protein phosphatase binding phosphatase binding protein phosphatase 2A binding protease binding transcription factor binding DNA-binding transcription factor binding molecular adaptor activity identical protein binding protein heterodimerization activity protein dimerization activity passive transmembrane transporter activity channel activity transporter activity transmembrane transporter activity molecular function inhibitor activity transporter inhibitor activity channel regulator activity molecular function regulator activity channel inhibitor activity transporter regulator activity	response to stimulus response to chemical response to xenobiotic stimulus inorganic ion homeostasis intracellular calcium ion homeostasis homeostatic process calcium ion homeostasis endoplasmic reticulum calcium ion homeostasis cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis response to stimulus response to chemical response to xenobiotic stimulus inorganic ion homeostasis intracellular calcium ion homeostasis homeostatic process calcium ion homeostasis endoplasmic reticulum calcium ion homeostasis cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis regulation of biological process regulation of cellular process regulation of mitochondrial depolarization negative regulation of membrane depolarization biological regulation negative regulation of biological process mitochondrial depolarization regulation of membrane depolarization regulation of mitochondrial membrane potential membrane depolarization cellular process regulation of biological quality negative regulation of mitochondrial depolarization regulation of membrane potential response to stress response to ischemia catabolic process autophagy metabolic process process utilizing autophagic mechanism apoptotic process cell death programmed cell death response to radiation response to abiotic stimulus negative regulation of programmed cell death regulation of apoptotic process regulation of anoikis regulation of programmed cell death negative regulation of anoikis negative regulation of apoptotic process anoikis negative regulation of cellular process multicellular organismal process B cell homeostasis multicellular organismal-level homeostasis leukocyte homeostasis immune system process homeostasis of number of cells lymphocyte homeostasis response to toxic substance developmental process epithelium development epidermis development molting cycle process hair cycle epidermis morphogenesis animal organ development morphogenesis of an epithelium tissue development tissue morphogenesis anatomical structure morphogenesis skin development skin epidermis development hair follicle development molting cycle anatomical structure development hair cycle process hair follicle morphogenesis positive regulation of locomotion regulation of cell motility positive regulation of smooth muscle cell migration regulation of smooth muscle cell migration positive regulation of biological process positive regulation of cell migration smooth muscle cell migration muscle cell migration regulation of locomotion positive regulation of cell motility regulation of cell migration cell migration cell motility locomotion positive regulation of cellular process response to metal ion response to iron ion axonogenesis cellular developmental process cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis cellular component organization neurogenesis multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation cellular component organization or biogenesis system development plasma membrane bounded cell projection organization nervous system development axon development cell morphogenesis involved in neuron differentiation generation of neurons neuron development mesenchyme development mesenchymal cell development mesenchymal cell differentiation immune system development spleen development hematopoietic or lymphoid organ development negative regulation of locomotion negative regulation of cell motility negative regulation of cell migration carbohydrate derivative biosynthetic process regulation of biosynthetic process regulation of protein metabolic process glycoprotein biosynthetic process carbohydrate derivative metabolic process primary metabolic process regulation of macromolecule metabolic process glycoprotein metabolic process macromolecule biosynthetic process regulation of glycoprotein metabolic process regulation of primary metabolic process biosynthetic process regulation of macromolecule biosynthetic process protein metabolic process macromolecule metabolic process regulation of metabolic process regulation of glycoprotein biosynthetic process ossification digestive system development tube development digestive tract development tube morphogenesis digestive tract morphogenesis negative regulation of catabolic process negative regulation of metabolic process regulation of catabolic process regulation of autophagy negative regulation of autophagy glomerulus development nephron development kidney development renal system development regulation of leukocyte apoptotic process regulation of lymphocyte apoptotic process leukocyte apoptotic process negative regulation of T cell apoptotic process lymphocyte apoptotic process negative regulation of leukocyte apoptotic process regulation of T cell apoptotic process T cell apoptotic process negative regulation of lymphocyte apoptotic process regulation of developmental process regulation of cell differentiation positive regulation of cell maturation regulation of neuron maturation regulation of cell development positive regulation of developmental process positive regulation of cell differentiation cell maturation regulation of cell maturation positive regulation of neuron maturation positive regulation of cell development developmental maturation anatomical structure maturation neuron maturation regulation of neuron differentiation organelle organization actin cytoskeleton organization actin filament organization actin filament-based process supramolecular fiber organization cytoskeleton organization response to hydrogen peroxide response to oxidative stress response to oxygen-containing compound response to reactive oxygen species regulation of localization regulation of calcium ion transport cellular localization regulation of calcium ion transport into cytosol transport monoatomic ion transmembrane transport negative regulation of monoatomic ion transport negative regulation of transport regulation of monoatomic ion transmembrane transport calcium ion transport metal ion transport negative regulation of transmembrane transport regulation of calcium ion transmembrane transport monoatomic cation transmembrane transport localization negative regulation of monoatomic ion transmembrane transport monoatomic ion transport negative regulation of cation transmembrane transport negative regulation of calcium ion transport into cytosol monoatomic cation transport regulation of metal ion transport calcium ion transmembrane import into cytosol regulation of transport regulation of monoatomic ion transport positive regulation of cytosolic calcium ion concentration establishment of localization negative regulation of calcium ion transport transmembrane transport regulation of transmembrane transport regulation of cellular localization regulation of monoatomic cation transmembrane transport negative regulation of calcium ion transmembrane transport negative regulation of cytosolic calcium ion concentration calcium ion transmembrane transport calcium ion transport into cytosol regulation of growth regulation of cellular component organization growth positive regulation of cell growth regulation of cell growth cell growth positive regulation of growth cochlear nucleus development pons development head development brain development central nervous system development metencephalon development hindbrain development neural nucleus development cell adhesion cell-matrix adhesion regulation of cell-matrix adhesion regulation of cell-substrate adhesion regulation of cell adhesion cell-substrate adhesion cellular response to stimulus negative regulation of extrinsic apoptotic signaling pathway in absence of ligand signal transduction in absence of ligand negative regulation of signaling signaling regulation of signal transduction negative regulation of cell communication extrinsic apoptotic signaling pathway negative regulation of signal transduction in absence of ligand cell communication negative regulation of extrinsic apoptotic signaling pathway negative regulation of apoptotic signaling pathway extrinsic apoptotic signaling pathway in absence of ligand signal transduction regulation of signaling cell surface receptor signaling pathway negative regulation of response to stimulus negative regulation of signal transduction regulation of extrinsic apoptotic signaling pathway apoptotic signaling pathway regulation of response to stimulus regulation of extrinsic apoptotic signaling pathway in absence of ligand regulation of cell communication regulation of apoptotic signaling pathway developmental growth organ growth neuron apoptotic process motor neuron apoptotic process cell population proliferation osteoblast proliferation B cell apoptotic process pigment cell differentiation pigmentation developmental pigmentation melanocyte differentiation sexual reproduction reproductive process multicellular organismal reproductive process oogenesis cellular process involved in reproduction in multicellular organism developmental process involved in reproduction female gamete generation gamete generation oocyte development germ cell development oocyte differentiation response to peptide response to cytokine dendritic cell apoptotic process negative regulation of dendritic cell apoptotic process regulation of dendritic cell apoptotic process positive regulation of cell population proliferation regulation of cell population proliferation B cell activation cell activation B cell proliferation lymphocyte activation leukocyte proliferation leukocyte activation mononuclear cell proliferation lymphocyte proliferation regulation of cellular response to stress regulation of intrinsic apoptotic signaling pathway in response to DNA damage intracellular signal transduction regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator intrinsic apoptotic signaling pathway in response to DNA damage intrinsic apoptotic signaling pathway negative regulation of signal transduction by p53 class mediator negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage intrinsic apoptotic signaling pathway by p53 class mediator negative regulation of intracellular signal transduction regulation of intrinsic apoptotic signaling pathway intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator cellular response to stress regulation of intracellular signal transduction regulation of response to stress regulation of signal transduction by p53 class mediator signal transduction by p53 class mediator negative regulation of intrinsic apoptotic signaling pathway negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator DNA damage response regulation of intrinsic apoptotic signaling pathway by p53 class mediator myeloid cell apoptotic process negative regulation of myeloid cell apoptotic process regulation of myeloid cell apoptotic process regulation of protein localization macromolecule localization intracellular protein localization positive regulation of skeletal muscle tissue development muscle cell differentiation regulation of skeletal muscle tissue development myotube differentiation muscle structure development positive regulation of muscle organ development regulation of skeletal muscle fiber development positive regulation of skeletal muscle fiber development muscle tissue development myotube cell development skeletal muscle fiber development positive regulation of striated muscle tissue development regulation of striated muscle tissue development positive regulation of muscle cell differentiation positive regulation of muscle tissue development regulation of muscle cell differentiation positive regulation of multicellular organismal process striated muscle cell differentiation regulation of muscle tissue development skeletal muscle tissue development regulation of striated muscle cell differentiation striated muscle tissue development skeletal muscle organ development striated muscle cell development muscle cell development regulation of myotube differentiation positive regulation of striated muscle cell differentiation regulation of multicellular organismal process muscle organ development regulation of muscle organ development response to ionizing radiation response to gamma radiation stem cell development stem cell differentiation pigment metabolic process phenol-containing compound metabolic process melanin metabolic process secondary metabolic process negative regulation of multicellular organismal process regulation of ossification negative regulation of ossification gonad development reproductive system development sex differentiation male gonad development male sex differentiation development of primary male sexual characteristics development of primary sexual characteristics reproductive structure development hemopoiesis B cell lineage commitment mononuclear cell differentiation lymphocyte differentiation B cell differentiation cell fate commitment leukocyte differentiation homeostasis of number of cells within a tissue anatomical structure homeostasis tissue homeostasis renal system process system process response to light stimulus response to UV response to UV-B cellular response to nutrient levels response to nutrient levels response to starvation cellular response to glucose starvation cellular response to starvation response to decreased oxygen levels cellular response to oxygen levels cellular response to hypoxia cellular response to decreased oxygen levels cellular response to chemical stimulus response to hypoxia response to oxygen levels gene expression regulation of gene expression positive regulation of programmed cell death positive regulation of apoptotic process negative regulation of cell growth negative regulation of growth extrinsic apoptotic signaling pathway via death domain receptors T cell differentiation in thymus T cell activation T cell differentiation protein polyubiquitination protein ubiquitination macromolecule modification post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal female gonad development female sex differentiation development of primary female sexual characteristics ovarian follicle development regulation of protein stability negative regulation of cell population proliferation negative regulation of osteoblast proliferation regulation of osteoblast proliferation mitotic cell cycle process cell cycle phase transition cell cycle G1/S transition of mitotic cell cycle cell cycle G1/S phase transition mitotic cell cycle mitotic cell cycle phase transition cell cycle process metanephros development gland morphogenesis gland development animal organ morphogenesis positive regulation of melanocyte differentiation regulation of pigment cell differentiation regulation of pigmentation positive regulation of developmental pigmentation regulation of melanocyte differentiation positive regulation of pigment cell differentiation regulation of developmental pigmentation sensory organ development visual system development eye morphogenesis regulation of retinal cell programmed cell death sensory system development eye development negative regulation of developmental process programmed cell death involved in cell development sensory organ morphogenesis retinal cell programmed cell death negative regulation of retinal cell programmed cell death focal adhesion assembly cell-substrate junction assembly cellular component biogenesis cell junction organization cellular component assembly cell junction assembly cell-substrate junction organization positive regulation of B cell proliferation regulation of leukocyte activation regulation of cell activation positive regulation of lymphocyte activation positive regulation of cell activation regulation of B cell proliferation regulation of B cell activation positive regulation of leukocyte activation positive regulation of mononuclear cell proliferation regulation of immune system process positive regulation of immune system process regulation of lymphocyte proliferation regulation of leukocyte proliferation positive regulation of lymphocyte proliferation positive regulation of B cell activation positive regulation of leukocyte proliferation regulation of mononuclear cell proliferation regulation of lymphocyte activation mesonephric epithelium development kidney epithelium development nephron morphogenesis branching morphogenesis of an epithelial tube nephron tubule morphogenesis nephron epithelium morphogenesis nephron tubule development ureteric bud morphogenesis branching involved in ureteric bud morphogenesis renal tubule development epithelial tube morphogenesis nephron epithelium development ureteric bud development mesonephros development kidney morphogenesis morphogenesis of a branching structure mesonephric tubule morphogenesis mesonephric tubule development renal tubule morphogenesis morphogenesis of a branching epithelium biological process involved in interspecies interaction between organisms defense response to virus defense response response to other organism response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus regulation of epithelial cell apoptotic process epithelial cell apoptotic process negative regulation of epithelial cell apoptotic process regulation of B cell apoptotic process negative regulation of B cell apoptotic process immune response-regulating cell surface receptor signaling pathway positive regulation of response to stimulus immune response-activating signaling pathway immune response-regulating signaling pathway positive regulation of immune response immune response-activating cell surface receptor signaling pathway immune response B cell receptor signaling pathway regulation of immune response antigen receptor-mediated signaling pathway activation of immune response thymus development vesicle organization cellular pigmentation pigment granule organization ear development multi-multicellular organism process female pregnancy multi-organism reproductive process humoral immune response reactive oxygen species metabolic process T cell homeostasis CD4-positive or CD8-positive, alpha-beta T cell lineage commitment CD8-positive, alpha-beta T cell activation CD8-positive, alpha-beta T cell differentiation alpha-beta T cell differentiation alpha-beta T cell activation alpha-beta T cell lineage commitment T cell lineage commitment CD8-positive, alpha-beta T cell lineage commitment positive T cell selection T cell selection negative regulation of neuron apoptotic process regulation of neuron apoptotic process response to corticosteroid response to lipid response to hormone response to steroid hormone response to endogenous stimulus response to glucocorticoid lymphoid progenitor cell differentiation hematopoietic progenitor cell differentiation hematopoietic stem cell differentiation regulation of cell cycle phase transition negative regulation of cell cycle regulation of cell cycle G1/S phase transition negative regulation of mitotic cell cycle regulation of mitotic cell cycle negative regulation of cell cycle phase transition regulation of cell cycle negative regulation of G1/S transition of mitotic cell cycle negative regulation of mitotic cell cycle phase transition regulation of cell cycle process negative regulation of cell cycle G1/S phase transition negative regulation of cell cycle process regulation of mitotic cell cycle phase transition regulation of G1/S transition of mitotic cell cycle regulation of response to nutrient levels nitrogen utilization regulation of nitrogen utilization intracellular nitrogen homeostasis regulation of viral life cycle regulation of viral process viral genome replication viral process regulation of viral genome replication viral life cycle negative regulation of cellular pH reduction intracellular pH reduction regulation of intracellular pH regulation of cellular pH reduction regulation of pH regulation of cellular pH regeneration response to axon injury neuron projection regeneration axon regeneration response to wounding intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress response to endoplasmic reticulum stress regulation of multicellular organism growth regulation of developmental growth positive regulation of multicellular organism growth multicellular organism growth positive regulation of developmental growth behavioral defense response behavior fear response behavioral fear response multicellular organismal response to stress cell-cell adhesion response to nicotine regulation of membrane permeability regulation of mitochondrial membrane permeability apoptotic mitochondrial changes release of cytochrome c from mitochondria mitochondrion organization intrinsic apoptotic signaling pathway in response to oxidative stress post-embryonic development regulation of motor neuron apoptotic process negative regulation of motor neuron apoptotic process	membrane-bounded organelle intracellular anatomical structure nuclear membrane membrane nucleus intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope cellular anatomical structure organelle nuclear envelope organelle membrane protein-containing complex membrane-bounded organelle intracellular anatomical structure nuclear membrane membrane nucleus intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope cellular anatomical structure organelle nuclear envelope organelle membrane protein-containing complex BCL-2 complex Bcl-2 family protein complex cytoplasm cytosol pore complex membrane protein complex organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum endoplasmic reticulum membrane mitochondrial membrane mitochondrion organelle outer membrane bounding membrane of organelle mitochondrial envelope mitochondrial outer membrane outer membrane BAD-BCL-2 complex myelin sheath
E, F [auth G], G [auth F], H	Beclin-1	phosphatidylinositol 3-kinase binding protein binding binding protein-macromolecule adaptor activity molecular adaptor activity ubiquitin protein ligase binding ubiquitin-like protein ligase binding enzyme binding identical protein binding GTPase binding kinase binding protein kinase binding	cellular response to stimulus cytoplasmic pattern recognition receptor signaling pathway regulation of defense response positive regulation of response to biotic stimulus regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms regulation of cellular process pattern recognition receptor signaling pathway response to stimulus regulation of response to external stimulus intracellular receptor signaling pathway signaling positive regulation of biological process response to biotic stimulus intracellular signal transduction cellular response to stimulus cytoplasmic pattern recognition receptor signaling pathway regulation of defense response positive regulation of response to biotic stimulus regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms regulation of cellular process pattern recognition receptor signaling pathway response to stimulus regulation of response to external stimulus intracellular receptor signaling pathway signaling positive regulation of biological process response to biotic stimulus intracellular signal transduction cell communication positive regulation of response to stimulus immune response-activating signaling pathway positive regulation of response to external stimulus immune response-regulating signaling pathway positive regulation of immune response regulation of response to stress response to stress innate immune response regulation of immune system process response to external biotic stimulus signal transduction positive regulation of immune system process innate immune response-activating signaling pathway regulation of biological process positive regulation of innate immune response defense response immune response response to other organism regulation of innate immune response biological regulation defense response to symbiont response to external stimulus regulation of response to stimulus immune system process defense response to other organism positive regulation of defense response activation of innate immune response regulation of immune response cellular process activation of immune response response to chemical response to xenobiotic stimulus p38MAPK cascade intracellular signaling cassette MAPK cascade cellular response to metal ion cellular response to chemical stimulus response to metal ion response to aluminum ion cellular response to aluminum ion phosphatidylinositol metabolic process glycerophospholipid biosynthetic process phosphatidylinositol-3-phosphate biosynthetic process glycerophospholipid metabolic process lipid biosynthetic process primary metabolic process phosphatidylinositol phosphate biosynthetic process phospholipid biosynthetic process phosphatidylinositol biosynthetic process phospholipid metabolic process biosynthetic process glycerolipid biosynthetic process organophosphate metabolic process organophosphate biosynthetic process phosphate-containing compound metabolic process metabolic process glycerolipid metabolic process phosphorus metabolic process lipid metabolic process cellular component disassembly catabolic process protein-containing complex organization macroautophagy autophagy protein-containing complex disassembly cellular component organization autophagosome maturation cellular component organization or biogenesis process utilizing autophagic mechanism regulation of catabolic process regulation of autophagy regulation of macroautophagy regulation of metabolic process cell division cellular response to nutrient levels response to nutrient levels cellular response to stress response to starvation cellular response to glucose starvation cellular response to starvation developmental process multicellular organism development multicellular organismal process skeletal system development anatomical structure development animal organ development bone development system development mitotic nuclear division mitotic metaphase chromosome alignment organelle fission chromosome organization sister chromatid segregation mitotic cell cycle metaphase chromosome alignment localization organelle organization nuclear division mitotic cell cycle process chromosome localization organelle localization nuclear chromosome segregation mitotic sister chromatid segregation cell cycle chromosome segregation cell cycle process apoptotic process cell death programmed cell death response to mitochondrial depolarisation response to iron(II) ion response to iron ion negative regulation of programmed cell death negative regulation of cellular process negative regulation of biological process regulation of programmed cell death regulation of cytokinesis regulation of cell cycle process cytokinesis regulation of cell division regulation of cell cycle JNK cascade muscle hypertrophy regulation of muscle adaptation system process positive regulation of cardiac muscle hypertrophy regulation of system process striated muscle hypertrophy regulation of muscle system process muscle system process regulation of cardiac muscle hypertrophy regulation of muscle hypertrophy muscle adaptation positive regulation of muscle hypertrophy cardiac muscle hypertrophy positive regulation of multicellular organismal process regulation of multicellular organismal process positive regulation of cell communication positive regulation of signal transduction regulation of signal transduction regulation of intrinsic apoptotic signaling pathway positive regulation of apoptotic signaling pathway regulation of intracellular signal transduction intrinsic apoptotic signaling pathway positive regulation of cellular process regulation of signaling positive regulation of programmed cell death regulation of apoptotic process positive regulation of intracellular signal transduction positive regulation of apoptotic process apoptotic signaling pathway regulation of cell communication positive regulation of intrinsic apoptotic signaling pathway regulation of apoptotic signaling pathway positive regulation of signaling response to decreased oxygen levels response to hypoxia response to oxygen levels response to abiotic stimulus establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region secretion by cell protein transport macromolecule localization intracellular protein localization cellular defense response response to nutrient response to oxygen-containing compound response to vitamin E response to vitamin positive regulation of organelle organization regulation of cellular component organization positive regulation of cellular component organization positive regulation of vacuole organization autophagosome organization cellular component biogenesis positive regulation of metabolic process cellular component assembly positive regulation of autophagosome assembly positive regulation of macroautophagy positive regulation of autophagy autophagosome assembly organelle assembly vacuole organization positive regulation of cellular component biogenesis regulation of autophagosome assembly regulation of vacuole organization regulation of cellular component biogenesis regulation of organelle organization positive regulation of catabolic process regulation of organelle assembly positive regulation of organelle assembly cellular response to amino acid starvation response to amino acid starvation defense response to virus response to virus receptor catabolic process receptor metabolic process macromolecule metabolic process macromolecule catabolic process amyloid-beta metabolic process cellular localization late endosome to vacuole transport establishment of localization in cell vacuolar transport intracellular transport vesicle-mediated transport protein-containing complex assembly negative regulation of lysosome organization negative regulation of cellular component organization lytic vacuole organization lysosome organization negative regulation of organelle organization regulation of lysosome organization rhythmic process circadian rhythm cellular response to nitrogen levels cellular response to nitrogen starvation negative regulation of apoptotic process stress granule assembly membraneless organelle assembly positive regulation of stress granule assembly regulation of stress granule assembly regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction phosphatidylinositol 3-kinase/protein kinase B signal transduction response to copper ion cellular response to copper ion cellular response to oxidative stress cellular response to chemical stress cellular response to oxygen-containing compound cellular response to hydrogen peroxide response to reactive oxygen species response to hydrogen peroxide response to oxidative stress cellular response to reactive oxygen species response to lead ion cell surface receptor protein serine/threonine kinase signaling pathway cell surface receptor signaling pathway SMAD protein signal transduction enzyme-linked receptor protein signaling pathway negative regulation of cell population proliferation cell population proliferation regulation of cell population proliferation negative regulation of organelle assembly negative regulation of autophagosome assembly negative regulation of catabolic process negative regulation of metabolic process negative regulation of macroautophagy negative regulation of autophagy protein targeting establishment of protein localization to vacuole protein localization to vacuole lysosomal transport protein localization to lysosome establishment of protein localization to organelle protein targeting to lysosome protein localization to organelle protein targeting to vacuole intracellular protein transport cellular response to endogenous stimulus cellular response to growth factor stimulus response to endogenous stimulus cellular response to epidermal growth factor stimulus response to epidermal growth factor response to growth factor mitophagy autophagy of mitochondrion endosomal transport vesicle-mediated transport between endosomal compartments early endosome to late endosome transport membrane organization import into cell engulfment of apoptotic cell phagocytosis, engulfment membrane invagination phagocytosis apoptotic cell clearance endocytosis plasma membrane invagination cellular response to oxygen levels cellular response to decreased oxygen levels cellular response to oxygen-glucose deprivation response to oxygen-glucose deprivation cellular developmental process cell development nervous system development generation of neurons neurogenesis neuron differentiation cell differentiation neuron development regulation of localization regulation of chromosome segregation regulation of attachment of mitotic spindle microtubules to kinetochore regulation of attachment of spindle microtubules to kinetochore positive regulation of cell cycle process positive regulation of chromosome segregation attachment of spindle microtubules to kinetochore attachment of mitotic spindle microtubules to kinetochore positive regulation of attachment of spindle microtubules to kinetochore regulation of chromosome organization positive regulation of cell cycle regulation of mitotic sister chromatid segregation regulation of sister chromatid segregation positive regulation of attachment of mitotic spindle microtubules to kinetochore regulation of metaphase plate congression	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol phosphatidylinositol 3-kinase complex, class III, type II protein-containing complex catalytic complex membrane membrane protein complex transferase complex phosphatidylinositol 3-kinase complex transferase complex, transferring phosphorus-containing groups phosphatidylinositol 3-kinase complex, class III extrinsic component of membrane cellular anatomical structure intracellular anatomical structure cytoplasm cytosol phosphatidylinositol 3-kinase complex, class III, type II protein-containing complex catalytic complex membrane membrane protein complex transferase complex phosphatidylinositol 3-kinase complex transferase complex, transferring phosphorus-containing groups phosphatidylinositol 3-kinase complex, class III extrinsic component of membrane somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection membrane-bounded organelle intracellular organelle organelle vacuole autophagosome intracellular membrane-bounded organelle Golgi apparatus subcompartment Golgi apparatus organelle subcompartment endomembrane system trans-Golgi network endosome membrane endosome intracellular vesicle cytoplasmic vesicle membrane bounding membrane of organelle vesicle membrane cytoplasmic vesicle vesicle organelle membrane phagophore assembly site phagocytic vesicle endocytic vesicle mitochondrial membrane mitochondrion cytoplasmic side of membrane organelle outer membrane cytoplasmic side of mitochondrial outer membrane side of membrane organelle envelope mitochondrial envelope mitochondrial outer membrane outer membrane endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum endoplasmic reticulum membrane phosphatidylinositol 3-kinase complex, class III, type I nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular organelle lumen nuclear body nucleoplasm organelle lumen membraneless organelle nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR036834	Bcl-2-like superfamily	Homologous Superfamily
A, B, C, D	IPR020731	Apoptosis regulator, Bcl-2, BH4 motif, conserved site	Conserved Site
A, B, C, D	IPR046371	Bcl-2, Bcl-2 homology region 1-3	Domain
A, B, C, D	IPR020717	Apoptosis regulator, Bcl-2, BH1 motif, conserved site	Conserved Site
A, B, C, D	IPR004725	Apoptosis regulator, Bcl-2/ BclX	Family
A, B, C, D	IPR003093	Apoptosis regulator, Bcl-2 protein, BH4	Domain
A, B, C, D	IPR002475	Bcl2-like	Family
A, B, C, D	IPR020728	Apoptosis regulator, Bcl-2, BH3 motif, conserved site	Conserved Site
A, B, C, D	IPR020726	Apoptosis regulator, Bcl-2, BH2 motif, conserved site	Conserved Site
A, B, C, D	IPR013278	Apoptosis regulator, Bcl-2	Family
A, B, C, D	IPR026298	Bcl-2 family	Family
E, F [auth G], G [auth F], H	IPR038274	Atg6/Beclin C-terminal domain superfamily	Homologous Superfamily
E, F [auth G], G [auth F], H	IPR029318	Beclin-1, BH3 domain	Domain
E, F [auth G], G [auth F], H	IPR040455	Atg6, BARA domain	Domain
E, F [auth G], G [auth F], H	IPR007243	Atg6/Beclin	Family
E, F [auth G], G [auth F], H	IPR041691	Atg6/beclin, coiled-coil domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D	Pharos: P10415	B-cell chronic lymphocytic leukemia follicular lymphoma diffuse large B-cell lymphoma acute myeloid leukemia Alzheimer disease synovial sarcoma malignant mesothelioma polycystic ovary syndrome retinal degeneration malignant colon neoplasm plasma cell myeloma mesenchymal chondrosarcoma male infertility osteochondrodysplasia papillary adenoma B-cell chronic lymphocytic leukemia follicular lymphoma diffuse large B-cell lymphoma acute myeloid leukemia Alzheimer disease synovial sarcoma malignant mesothelioma polycystic ovary syndrome retinal degeneration malignant colon neoplasm plasma cell myeloma mesenchymal chondrosarcoma male infertility osteochondrodysplasia papillary adenoma breast carcinoma type 2 diabetes mellitus esophageal cancer clear cell adenocarcinoma Metaplasia alcoholic liver cirrhosis contact dermatitis sarcomatoid carcinoma hypertensive disorder asthma intestinal cancer adenocarcinoma carcinoma adenoma prostate cancer follicular thyroid adenoma microcystic adenoma myocardial infarction granular cell carcinoma allergic contact dermatitis azoospermia breast cancer tubular adenocarcinoma erectile dysfunction cancer gallbladder cancer colorectal cancer multiple epiphyseal dysplasia head and neck cancer coronary artery disease neoplasm of neck hematologic disease Schwartz-Jampel syndrome depressive disorder neurodegenerative disease skin disease inborn carbohydrate metabolic disorder spondyloepiphyseal dysplasia tarda, X-linked ovarian disease intestinal neoplasm transitional cell carcinoma malignant tumor of neck ductal breast carcinoma in situ ischemia reperfusion injury bipolar disorder maturity-onset diabetes of the young plasma cell neoplasm uterine disease prostate carcinoma gallbladder neoplasm psoriasis lymphatic system disease colorectal carcinoma myeloid neoplasm glioblastoma reticulum cell sarcoma neoplasm of esophagus head and neck neoplasm cribriform carcinoma non-alcoholic fatty liver disease stomach disease osteosarcoma autoimmune disease pancreatic intraductal papillary-mucinous carcinoma benign colon neoplasm tuberculosis pituitary cancer kidney disease bipolar I disorder breast disease undifferentiated carcinoma medulloblastoma learning disability fetal alcohol spectrum disorder liver disease prostate disease lung cancer colonic neoplasm gastric cancer lymphoma neoplasm of mature B-cells schizophrenia cribriform carcinoma of breast Sjogren syndrome lymphosarcoma non-Hodgkin lymphoma idiopathic scoliosis autism spondyloepiphyseal dysplasia ovarian cancer intestinal disease toxic encephalopathy pancreatic intraductal papillary-mucinous neoplasm intracerebral hemorrhage benign connective and soft tissue neoplasm large cell medulloblastoma Melnick-Needles syndrome eye disease fetal alcohol syndrome cerebrovascular disorder lung disease gastric carcinoma connective tissue disease sarcoidosis
E, F [auth G], G [auth F], H	Pharos: Q14457	status epilepticus myocardial infarction Lewy body dementia malignant colon neoplasm Status Epilepticus, Subclinical benign colon neoplasm lung benign neoplasm pancreatic intraductal papillary-mucinous carcinoma cancer osteosarcoma colonic neoplasm neurodegenerative disease ovarian cancer schizophrenia

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.