Annotations: 5VF3

Bacteriophage T4 isometric capsid

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
X [auth Y]	SCOP2B Superfamily	Soc/TGAM_1934-like	8093184	3002690	SCOP2B (2022-06-29)
W [auth X]	SCOP2B Superfamily	Soc/TGAM_1934-like	8093184	3002690	SCOP2B (2022-06-29)
V [auth W]	SCOP2B Superfamily	Soc/TGAM_1934-like	8093184	3002690	SCOP2B (2022-06-29)
U [auth V]	SCOP2B Superfamily	Soc/TGAM_1934-like	8093184	3002690	SCOP2B (2022-06-29)
T [auth U]	SCOP2B Superfamily	Soc/TGAM_1934-like	8093184	3002690	SCOP2B (2022-06-29)
S [auth T]	SCOP2B Superfamily	Soc/TGAM_1934-like	8093184	3002690	SCOP2B (2022-06-29)
R [auth S]	SCOP2B Superfamily	Soc/TGAM_1934-like	8093184	3002690	SCOP2B (2022-06-29)
Q [auth R]	SCOP2B Superfamily	Soc/TGAM_1934-like	8093184	3002690	SCOP2B (2022-06-29)
P [auth Q]	SCOP2B Superfamily	Soc/TGAM_1934-like	8093184	3002690	SCOP2B (2022-06-29)
O [auth P]	SCOP2B Superfamily	Soc/TGAM_1934-like	8093184	3002690	SCOP2B (2022-06-29)
N [auth O]	SCOP2 Family	Soc-like	8086838	4004986	SCOP2 (2022-06-29)
N [auth O]	SCOP2 Superfamily	Soc/TGAM_1934-like	8093184	3002690	SCOP2 (2022-06-29)
A [auth a]	SCOP2B Superfamily	Phage coat protein-like	8054156	3001529	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
X [auth Y]	XRCC4	e5vf3Y1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: XRCC4	ECOD (v295.2)
W [auth X]	XRCC4	e5vf3X1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: XRCC4	ECOD (v295.2)
V [auth W]	XRCC4	e5vf3W1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: XRCC4	ECOD (v295.2)
U [auth V]	XRCC4	e5vf3V1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: XRCC4	ECOD (v295.2)
T [auth U]	XRCC4	e5vf3U1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: XRCC4	ECOD (v295.2)
S [auth T]	XRCC4	e5vf3T1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: XRCC4	ECOD (v295.2)
R [auth S]	XRCC4	e5vf3S1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: XRCC4	ECOD (v295.2)
Q [auth R]	XRCC4	e5vf3R1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: XRCC4	ECOD (v295.2)
P [auth Q]	XRCC4	e5vf3Q1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: XRCC4	ECOD (v295.2)
O [auth P]	XRCC4	e5vf3P1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: XRCC4	ECOD (v295.2)
N [auth O]	XRCC4	e5vf3O1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: XRCC4	ECOD (v295.2)
M [auth L]		e5vf3L1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295.2)
L [auth K]		e5vf3K1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295.2)
K [auth J]		e5vf3J1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295.2)
J [auth I]		e5vf3I1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295.2)
I [auth H]		e5vf3H1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295.2)
H [auth G]		e5vf3G1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295.2)
G [auth F]		e5vf3F1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295.2)
F [auth E]		e5vf3E1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295.2)
E [auth D]		e5vf3D1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295.2)
D [auth C]		e5vf3C1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295.2)
C [auth B]		e5vf3B1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295.2)
B [auth A]		e5vf3A1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295.2)
A [auth a]	XRCC4	e5vf3a1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: XRCC4	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
X [auth Y]	3.90.930.20	Alpha Beta	Alpha-Beta Complex	Outer Surface Protein A	domain 3	CATH (4.3.0)
W [auth X]	3.90.930.20	Alpha Beta	Alpha-Beta Complex	Outer Surface Protein A	domain 3	CATH (4.3.0)
V [auth W]	3.90.930.20	Alpha Beta	Alpha-Beta Complex	Outer Surface Protein A	domain 3	CATH (4.3.0)
U [auth V]	3.90.930.20	Alpha Beta	Alpha-Beta Complex	Outer Surface Protein A	domain 3	CATH (4.3.0)
T [auth U]	3.90.930.20	Alpha Beta	Alpha-Beta Complex	Outer Surface Protein A	domain 3	CATH (4.3.0)
S [auth T]	3.90.930.20	Alpha Beta	Alpha-Beta Complex	Outer Surface Protein A	domain 3	CATH (4.3.0)
R [auth S]	3.90.930.20	Alpha Beta	Alpha-Beta Complex	Outer Surface Protein A	domain 3	CATH (4.3.0)
Q [auth R]	3.90.930.20	Alpha Beta	Alpha-Beta Complex	Outer Surface Protein A	domain 3	CATH (4.3.0)
P [auth Q]	3.90.930.20	Alpha Beta	Alpha-Beta Complex	Outer Surface Protein A	domain 3	CATH (4.3.0)
O [auth P]	3.90.930.20	Alpha Beta	Alpha-Beta Complex	Outer Surface Protein A	domain 3	CATH (4.3.0)
N [auth O]	3.90.930.20	Alpha Beta	Alpha-Beta Complex	Outer Surface Protein A	domain 3	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
N [auth O], O [auth P], P [auth Q], Q [auth R], R [auth S], N [auth O], O [auth P], P [auth Q], Q [auth R], R [auth S], S [auth T], T [auth U], U [auth V], V [auth W], W [auth X], X [auth Y]	PF16855	Small outer capsid protein (Soc)	Small outer capsid protein	This protein attaches to and stabilises the bacteriophage capsid [1].	Domain
B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H [auth G], I [auth H], J [auth I], K [auth J], L [auth K], M [auth L]	PF07068	Major capsid protein Gp23 (Gp23)	Major capsid protein Gp23	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
Z [auth z]	Highly immunogenic outer capsid protein	-	-	-
Y [auth Z]	Highly immunogenic outer capsid protein	-	-	viral capsid virion component viral capsid, decoration
N [auth O], O [auth P], P [auth Q], Q [auth R], R [auth S], N [auth O], O [auth P], P [auth Q], Q [auth R], R [auth S], S [auth T], T [auth U], U [auth V], V [auth W], W [auth X], X [auth Y]	Small outer capsid protein	-	-	viral capsid virion component viral capsid, decoration
B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H [auth G], I [auth H], J [auth I], K [auth J], L [auth K], M [auth L]	Major capsid protein	-	-	viral capsid virion component icosahedral viral capsid T=13 icosahedral viral capsid
A [auth a]	Capsid vertex protein gp24	-	-	viral capsid virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
Y [auth Z]	IPR038998	Highly immunogenic outer capsid protein	Family
Y [auth Z]	IPR035986	PKD domain superfamily	Homologous Superfamily
Y [auth Z]	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
Y [auth Z]	IPR022409	PKD/Chitinase domain	Domain
Y [auth Z]	IPR000601	PKD domain	Domain
Y [auth Z]	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
Y [auth Z]	IPR007110	Immunoglobulin-like domain	Domain
N [auth O], O [auth P], P [auth Q], Q [auth R], R [auth S], N [auth O], O [auth P], P [auth Q], Q [auth R], R [auth S], S [auth T], T [auth U], U [auth V], V [auth W], W [auth X], X [auth Y]	IPR038151	Small outer capsid protein superfamily	Homologous Superfamily
N [auth O], O [auth P], P [auth Q], Q [auth R], R [auth S], N [auth O], O [auth P], P [auth Q], Q [auth R], R [auth S], S [auth T], T [auth U], U [auth V], V [auth W], W [auth X], X [auth Y]	IPR031743	Small outer capsid protein	Family
B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H [auth G], I [auth H], J [auth I], K [auth J], L [auth K], M [auth L]	IPR010762	Capsid protein, T4-like bacteriophage-like	Family
B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H [auth G], I [auth H], J [auth I], K [auth J], L [auth K], M [auth L]	IPR038997	Major capsid protein, Myoviridae	Family
A [auth a]	IPR010762	Capsid protein, T4-like bacteriophage-like	Family
A [auth a]	IPR038999	Capsid vertex protein	Family