5VPF

Transcription factor FosB/JunD bZIP domain in complex with cognate DNA, type-II crystal

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
E [auth C]	SCOP2B Superfamily	Leucine zipper-like	8070291	3001609	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Leucine zipper-like	8070291	3001609	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Leucine zipper-like	8072525	3001609	SCOP2B (2022-06-29)
F [auth D]	SCOP2B Superfamily	Leucine zipper-like	8072525	3001609	SCOP2B (2022-06-29)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
E [auth C]	1.20.5.170	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
A	1.20.5.170	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
B	1.20.5.170	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
F [auth D]	1.20.5.170	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, E [auth C]	PF00170	bZIP transcription factor (bZIP_1)	bZIP transcription factor	-	Coiled-coil
B, F [auth D]	PF00170	bZIP transcription factor (bZIP_1)	bZIP transcription factor	-	Coiled-coil

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, E [auth C]	Protein fosB	DNA binding sequence-specific DNA binding binding double-stranded DNA binding nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding organic cyclic compound binding transcription regulatory region nucleic acid binding RNA polymerase II cis-regulatory region sequence-specific DNA binding DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA binding sequence-specific DNA binding binding double-stranded DNA binding nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding organic cyclic compound binding transcription regulatory region nucleic acid binding RNA polymerase II cis-regulatory region sequence-specific DNA binding DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity	response to stimulus response to chemical response to xenobiotic stimulus adult behavior multicellular organismal process response to oxygen-containing compound response to nitrogen compound response to alkaloid behavior behavioral response to cocaine response to organic cyclic compound response to cocaine multi-multicellular organism process reproductive process response to stimulus response to chemical response to xenobiotic stimulus adult behavior multicellular organismal process response to oxygen-containing compound response to nitrogen compound response to alkaloid behavior behavioral response to cocaine response to organic cyclic compound response to cocaine multi-multicellular organism process reproductive process female pregnancy multi-organism reproductive process response to ketone response to lipid response to hormone response to steroid hormone response to endogenous stimulus response to progesterone RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process transcription by RNA polymerase II biosynthetic process metabolic process cellular process macromolecule metabolic process cellular response to stimulus cellular response to endogenous stimulus cellular response to chemical stimulus cellular response to hormone stimulus cellular response to metal ion response to metal ion cellular response to calcium ion response to calcium ion response to alcohol response to glucocorticoid response to corticosterone response to mineralocorticoid response to corticosteroid response to ethanol response to mechanical stimulus response to abiotic stimulus response to external stimulus response to morphine response to isoquinoline alkaloid response to amine response to amphetamine regulation of cellular process regulation of primary metabolic process regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II regulation of biosynthetic process regulation of biological process biological regulation regulation of macromolecule metabolic process regulation of gene expression regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process response to organophosphorus response to purine-containing compound response to cAMP negative regulation of biological process negative regulation of RNA biosynthetic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process negative regulation of macromolecule metabolic process negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of metabolic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of RNA metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle organelle intracellular membrane-bounded organelle nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle organelle intracellular membrane-bounded organelle nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen membraneless organelle intracellular membraneless organelle chromatin chromosome
B, F [auth D]	Transcription factor jun-D	DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding organic cyclic compound binding nucleic acid binding transcription regulatory region nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding RNA polymerase II cis-regulatory region sequence-specific DNA binding transcription factor binding transcription coregulator binding DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding organic cyclic compound binding nucleic acid binding transcription regulatory region nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding RNA polymerase II cis-regulatory region sequence-specific DNA binding transcription factor binding transcription coregulator binding protein binding DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity enzyme binding	developmental process multicellular organismal process osteoblast development cellular developmental process ossification cell differentiation anatomical structure development cell development cellular process osteoblast differentiation cellular response to stimulus cellular response to metal ion cellular response to chemical stimulus response to stimulus developmental process multicellular organismal process osteoblast development cellular developmental process ossification cell differentiation anatomical structure development cell development cellular process osteoblast differentiation cellular response to stimulus cellular response to metal ion cellular response to chemical stimulus response to stimulus response to metal ion response to chemical cellular response to calcium ion response to calcium ion biosynthetic process metabolic process macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of osteoblast differentiation regulation of biological process regulation of cellular process regulation of developmental process biological regulation positive regulation of biological process regulation of cell differentiation positive regulation of developmental process positive regulation of osteoblast differentiation positive regulation of cell differentiation positive regulation of cellular process cell population proliferation regulation of cell population proliferation RNA metabolic process regulation of primary metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process transcription by RNA polymerase II regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II regulation of biosynthetic process primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process regulation of gene expression regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process cell cycle regulation of cell cycle negative regulation of biological process negative regulation of RNA biosynthetic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process negative regulation of macromolecule metabolic process negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of metabolic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of RNA metabolic process positive regulation of DNA-templated transcription positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of nucleobase-containing compound metabolic process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process	RNA polymerase II transcription regulator complex membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex transcription regulator complex intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure organelle transcription factor AP-1 complex membrane-enclosed lumen intracellular organelle lumen RNA polymerase II transcription regulator complex membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex transcription regulator complex intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure organelle transcription factor AP-1 complex membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen membraneless organelle intracellular membraneless organelle chromatin chromosome transcription repressor complex
D [auth F], H	DNA (5'-D(CPGPTPCPGPGPTPGPAPGPTPCPAPCPCPGPAPCP*G)-3')	-	-	-
C [auth E], G	DNA (5'-D(CPGPTPCPGPGPTPGPAPCPTPCPAPCPCPGPAPCP*G)-3')	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, E [auth C]	IPR004827	Basic-leucine zipper domain	Domain
A, E [auth C]	IPR000837	AP-1 transcription factor	Family
A, E [auth C]	IPR046347	Basic-leucine zipper domain superfamily	Homologous Superfamily
B, F [auth D]	IPR004827	Basic-leucine zipper domain	Domain
B, F [auth D]	IPR008917	Transcription factor, Skn-1-like, DNA-binding domain superfamily	Homologous Superfamily
B, F [auth D]	IPR005643	Jun-like transcription factor	Domain
B, F [auth D]	IPR002112	Transcription factor Jun	Family
B, F [auth D]	IPR050946	AP-1 Transcription Factor bZIP	Family
B, F [auth D]	IPR046347	Basic-leucine zipper domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, E [auth C]	Pharos: P53539	intermittent explosive disorder juvenile idiopathic arthritis kleptomania cocaine abuse Cognition Disorders hepatocellular carcinoma liver cancer cocaine dependence epilepsy pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia psoriasis gastric carcinoma Sjogren syndrome acute myeloid leukemia lung adenocarcinoma intermittent explosive disorder juvenile idiopathic arthritis kleptomania cocaine abuse Cognition Disorders hepatocellular carcinoma liver cancer cocaine dependence epilepsy pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia psoriasis gastric carcinoma Sjogren syndrome acute myeloid leukemia lung adenocarcinoma adrenal cortex carcinoma lung carcinoma malignant colon neoplasm nephrosclerosis ductal breast carcinoma in situ pancreatic intraductal papillary-mucinous carcinoma Emery-Dreifuss muscular dystrophy pituitary cancer pterygium ulcerative colitis invasive ductal breast carcinoma adenoma lung benign neoplasm atypical teratoid rhabdoid tumor breast cancer movement disorder non-small cell lung carcinoma pancreatic intraductal papillary-mucinous neoplasm gastric cancer rheumatoid arthritis impulse control disorder liver neoplasm adrenal cortex adenoma lung cancer lymphoplasmacytic lymphoma breast carcinoma medulloblastoma drug-induced dyskinesia ovarian cancer
B, F [auth D]	Pharos: P17535	glomerulonephritis status epilepticus cirrhosis of liver amyotrophic lateral sclerosis type 1 cocaine abuse cocaine dependence Hashimoto thyroiditis large cell medulloblastoma lung carcinoma Malignant neoplasm of lung non-small cell lung carcinoma atypical teratoid rhabdoid tumor psoriasis gastroesophageal reflux disease hypertensive disorder glomerulonephritis status epilepticus cirrhosis of liver amyotrophic lateral sclerosis type 1 cocaine abuse cocaine dependence Hashimoto thyroiditis large cell medulloblastoma lung carcinoma Malignant neoplasm of lung non-small cell lung carcinoma atypical teratoid rhabdoid tumor psoriasis gastroesophageal reflux disease hypertensive disorder lung benign neoplasm medulloblastoma ovarian cancer plasma cell myeloma subependymal giant cell astrocytoma gastric cancer Gaucher disease hypothyroidism lung cancer malignant ependymoma pancreatic ductal adenocarcinoma polycystic ovary syndrome chronic obstructive pulmonary disease Crohn disease gastric carcinoma glioblastoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.