5W0P
Crystal structure of rhodopsin bound to visual arrestin determined by X-ray free electron laser
External Resource: Annotation
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Pharos: Disease Associations
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Protein Modification Annotation
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Class A (rhodopsin) G protein-coupled receptor-like | 8070799 | 4001858 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | G protein-coupled receptor-like | 8070800 | 3000473 | SCOP2 (2022-06-29) |
A | SCOP2B Superfamily | Lysozyme-like | 8033861 | 3001879 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | G protein-coupled receptor-like | 8070800 | 3000473 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | G protein-coupled receptor-like | 8070800 | 3000473 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Lysozyme-like | 8033861 | 3001879 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | G protein-coupled receptor-like | 8070800 | 3000473 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Arrestin_C | e5w0pA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Arrestin_C | ECOD (1.6) |
A | Arrestin_N | e5w0pA3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Arrestin_N | ECOD (1.6) |
A | 7tm_1 | e5w0pA2 | A: alpha bundles | X: Family A G protein-coupled receptor-like (From Topology) | H: Family A G protein-coupled receptor-like (From Topology) | T: Family A G protein-coupled receptor-like | F: 7tm_1 | ECOD (1.6) |
A | Phage_lysozyme_2 | e5w0pA4 | A: a+b complex topology | X: Lysozyme-like (From Homology) | H: Lysozyme-like | T: Lysozyme-like | F: Phage_lysozyme_2 | ECOD (1.6) |
B | Arrestin_C | e5w0pB3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Arrestin_C | ECOD (1.6) |
B | Arrestin_N | e5w0pB4 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Arrestin_N | ECOD (1.6) |
B | 7tm_1 | e5w0pB1 | A: alpha bundles | X: Family A G protein-coupled receptor-like (From Topology) | H: Family A G protein-coupled receptor-like (From Topology) | T: Family A G protein-coupled receptor-like | F: 7tm_1 | ECOD (1.6) |
D | Arrestin_C | e5w0pD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Arrestin_C | ECOD (1.6) |
D | Arrestin_N | e5w0pD4 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Arrestin_N | ECOD (1.6) |
D | 7tm_1 | e5w0pD2 | A: alpha bundles | X: Family A G protein-coupled receptor-like (From Topology) | H: Family A G protein-coupled receptor-like (From Topology) | T: Family A G protein-coupled receptor-like | F: 7tm_1 | ECOD (1.6) |
D | Phage_lysozyme_2 | e5w0pD3 | A: a+b complex topology | X: Lysozyme-like (From Homology) | H: Lysozyme-like | T: Lysozyme-like | F: Phage_lysozyme_2 | ECOD (1.6) |
C | Arrestin_C | e5w0pC2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Arrestin_C | ECOD (1.6) |
C | Arrestin_N | e5w0pC4 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Arrestin_N | ECOD (1.6) |
C | 7tm_1 | e5w0pC1 | A: alpha bundles | X: Family A G protein-coupled receptor-like (From Topology) | H: Family A G protein-coupled receptor-like (From Topology) | T: Family A G protein-coupled receptor-like | F: 7tm_1 | ECOD (1.6) |
C | Phage_lysozyme_2 | e5w0pC3 | A: a+b complex topology | X: Lysozyme-like (From Homology) | H: Lysozyme-like | T: Lysozyme-like | F: Phage_lysozyme_2 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00339 | Arrestin (or S-antigen), N-terminal domain (Arrestin_N) | Arrestin (or S-antigen), N-terminal domain | Ig-like beta-sandwich fold. Scop reports duplication with C-terminal domain. | Domain | |
PF00959 | Phage lysozyme (Phage_lysozyme) | Phage lysozyme | This family includes lambda phage lysozyme and E. coli endolysin. | Domain | |
PF00001 | 7 transmembrane receptor (rhodopsin family) (7tm_1) | 7 transmembrane receptor (rhodopsin family) | - | Family | |
PF02752 | Arrestin (or S-antigen), C-terminal domain (Arrestin_C) | Arrestin (or S-antigen), C-terminal domain | Ig-like beta-sandwich fold. Scop reports duplication with N-terminal domain. | Domain | |
PF10413 | Amino terminal of the G-protein receptor rhodopsin (Rhodopsin_N) | Amino terminal of the G-protein receptor rhodopsin | Rhodopsin is the archetypal G-protein-coupled receptor. Such receptors participate in virtually all physiological processes, as signalling molecules. They utilise heterotrimeric guanosine triphosphate (GTP)-binding proteins to transduce extracellular ... | Domain | |
PF00339 | Arrestin (or S-antigen), N-terminal domain (Arrestin_N) | Arrestin (or S-antigen), N-terminal domain | Ig-like beta-sandwich fold. Scop reports duplication with C-terminal domain. | Domain | |
PF00959 | Phage lysozyme (Phage_lysozyme) | Phage lysozyme | This family includes lambda phage lysozyme and E. coli endolysin. | Domain | |
PF00001 | 7 transmembrane receptor (rhodopsin family) (7tm_1) | 7 transmembrane receptor (rhodopsin family) | - | Family | |
PF02752 | Arrestin (or S-antigen), C-terminal domain (Arrestin_C) | Arrestin (or S-antigen), C-terminal domain | Ig-like beta-sandwich fold. Scop reports duplication with N-terminal domain. | Domain | |
PF10413 | Amino terminal of the G-protein receptor rhodopsin (Rhodopsin_N) | Amino terminal of the G-protein receptor rhodopsin | Rhodopsin is the archetypal G-protein-coupled receptor. Such receptors participate in virtually all physiological processes, as signalling molecules. They utilise heterotrimeric guanosine triphosphate (GTP)-binding proteins to transduce extracellular ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Rhodopsin-like receptors and pumps | G-protein coupled receptors, family A |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
SEP | Parent Component: SER :  AA0037 :  O-phospho-L-serine MOD:00046 | |
TPO | Parent Component: THR :  AA0037 , AA0038 :  O-phospho-L-serine MOD:00046 , O-phospho-L-threonine MOD:00047 | |
SEP | Parent Component: SER :  AA0037 , AA0038 , AA0037 :  O-phospho-L-serine MOD:00046 , O-phospho-L-threonine MOD:00047 , O-phospho-L-serine MOD:00046 |