5X8L | pdb_00005x8l

PD-L1 in complex with atezolizumab


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad5x8la_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
D [auth B]d5x8lb_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
G [auth C]d5x8lc_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
J [auth D]d5x8ld_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
M [auth E]d5x8le_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
B [auth K]d5x8lk2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
B [auth K]d5x8lk1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
E [auth L]d5x8ll2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
E [auth L]d5x8ll1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
H [auth M]d5x8lm2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
H [auth M]d5x8lm1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
K [auth N]d5x8ln2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
K [auth N]d5x8ln1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
N [auth O]d5x8lo2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
N [auth O]d5x8lo1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
C [auth F]d5x8lf_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
F [auth G]d5x8lg_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
I [auth H]d5x8lh_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
L [auth S]d5x8ls_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
O [auth J]d5x8lj_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AKOW5_SPT5e5x8lA1 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: KOW5_SPT5ECOD (v294.1)
D [auth B]KOW5_SPT5e5x8lB1 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: KOW5_SPT5ECOD (v294.1)
G [auth C]KOW5_SPT5e5x8lC1 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: KOW5_SPT5ECOD (v294.1)
J [auth D]KOW5_SPT5e5x8lD1 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: KOW5_SPT5ECOD (v294.1)
M [auth E]KOW5_SPT5e5x8lE1 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: KOW5_SPT5ECOD (v294.1)
B [auth K]KOW5_SPT5e5x8lK1 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: KOW5_SPT5ECOD (v294.1)
E [auth L]KOW5_SPT5e5x8lL1 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: KOW5_SPT5ECOD (v294.1)
H [auth M]KOW5_SPT5e5x8lM1 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: KOW5_SPT5ECOD (v294.1)
K [auth N]KOW5_SPT5e5x8lN1 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: KOW5_SPT5ECOD (v294.1)
N [auth O]KOW5_SPT5e5x8lO1 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: KOW5_SPT5ECOD (v294.1)
C [auth F]KOW5_SPT5e5x8lF1 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: KOW5_SPT5ECOD (v294.1)
F [auth G]KOW5_SPT5e5x8lG1 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: KOW5_SPT5ECOD (v294.1)
I [auth H]KOW5_SPT5e5x8lH1 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: KOW5_SPT5ECOD (v294.1)
L [auth S]KOW5_SPT5e5x8lS1 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: KOW5_SPT5ECOD (v294.1)
O [auth J]KOW5_SPT5e5x8lJ1 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: KOW5_SPT5ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
A,
D [auth B],
G [auth C],
J [auth D],
M [auth E]
PD-L1(Programmed cell death 1 ligand 1) 1V-LIKE Homo sapiens (human) CD274*01 V-LIKE-DOMAIN V-LIKE RPI 1V-LIKE IMGT (202611-0)
B [auth K],
E [auth L],
H [auth M],
K [auth N],
N [auth O]
Fab atezolizumab L-KAPPA Homo sapiens (human) IGKJ1*01, IGKC*01 V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA IG FAB-GAMMA-1_KAPPA IMGT (202611-0)
C [auth F],
F [auth G],
I [auth H],
L [auth S],
O [auth J]
Fab atezolizumab VH-CH1 Homo sapiens (human) IGHV3-23*04, IGHJ4*01, IGHJ4*02, IGHJ4*03, IGHG1*01, IGHG1*02, IGHG1*04, IGHG1*05 V-DOMAIN VH, C-DOMAIN CH1 IG FAB-GAMMA-1_KAPPA IMGT (202611-0)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
B [auth K],
E [auth L],
H [auth M],
K [auth N],
N [auth O]
Light ChainIGKV1 Kappaprogrammed cell death 1 ligand 1SAbDab (2026-03-27)
C [auth F],
F [auth G],
I [auth H],
L [auth S],
O [auth J]
Heavy ChainIGHV3 -programmed cell death 1 ligand 1SAbDab (2026-03-27)

Thera-SAbDab Antibody Annotation Thera-SAbDab Database Homepage

ChainNameTargetProvenance Source
B [auth K],
E [auth L],
H [auth M],
K [auth N],
N [auth O]
Sudubrilimab PDL1/CD274, VEGFTherapeutic SAbDab (2026-03-27)
C [auth F],
F [auth G],
I [auth H],
L [auth S],
O [auth J]
Atezolizumab PDL1/CD274, VEGFTherapeutic SAbDab (2026-03-27)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
D [auth B],
G [auth C],
J [auth D],
M [auth E]
PF07686Immunoglobulin V-set domain (V-set)Immunoglobulin V-set domainThis domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
D [auth B],
G [auth C],
J [auth D],
M [auth E]
Programmed cell death 1 ligand 1
B [auth K],
E [auth L],
H [auth M],
K [auth N],
N [auth O]
atezolizumab light chain---
C [auth F],
F [auth G],
I [auth H],
L [auth S],
O [auth J]
atezolizumab heavy chain---

Pharos: Disease Associations Pharos Homepage Annotation