5XAZ | pdb_00005xaz

Crystal structure of full length native tylp, a tetr regulator from streptomyces fradiae

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H [auth G]	SCOP2B Superfamily	TetR C-terminal domain-like	8090147	3000086	SCOP2B (2022-06-29)
H [auth G]	SCOP2B Superfamily	Homeodomain-like	8088780	3000001	SCOP2B (2022-06-29)
G [auth F]	SCOP2B Superfamily	Homeodomain-like	8088780	3000001	SCOP2B (2022-06-29)
G [auth F]	SCOP2B Superfamily	TetR C-terminal domain-like	8090147	3000086	SCOP2B (2022-06-29)
F [auth E]	SCOP2B Superfamily	Homeodomain-like	8088780	3000001	SCOP2B (2022-06-29)
F [auth E]	SCOP2B Superfamily	TetR C-terminal domain-like	8090147	3000086	SCOP2B (2022-06-29)
E [auth D]	SCOP2B Superfamily	TetR C-terminal domain-like	8090147	3000086	SCOP2B (2022-06-29)
E [auth D]	SCOP2B Superfamily	Homeodomain-like	8088780	3000001	SCOP2B (2022-06-29)
D [auth C]	SCOP2B Superfamily	TetR C-terminal domain-like	8090147	3000086	SCOP2B (2022-06-29)
D [auth C]	SCOP2B Superfamily	Homeodomain-like	8088780	3000001	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	Homeodomain-like	8088780	3000001	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	TetR C-terminal domain-like	8090147	3000086	SCOP2B (2022-06-29)
B [auth H]	SCOP2B Superfamily	TetR C-terminal domain-like	8090147	3000086	SCOP2B (2022-06-29)
B [auth H]	SCOP2B Superfamily	Homeodomain-like	8088780	3000001	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	TetR C-terminal domain-like	8090147	3000086	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Homeodomain-like	8088780	3000001	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H [auth G]	TetR_N	e5xazG2	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: TetR_N	ECOD (1.6)
H [auth G]	TetR_C_11_like_1	e5xazG1	A: alpha bundles	X: Tetracyclin repressor-like, C-terminal domain (From Topology)	H: Tetracyclin repressor-like, C-terminal domain (From Topology)	T: Tetracyclin repressor-like, C-terminal domain	F: TetR_C_11_like_1	ECOD (1.6)
G [auth F]	TetR_N	e5xazF1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: TetR_N	ECOD (1.6)
G [auth F]	TetR_C_11_like_1	e5xazF2	A: alpha bundles	X: Tetracyclin repressor-like, C-terminal domain (From Topology)	H: Tetracyclin repressor-like, C-terminal domain (From Topology)	T: Tetracyclin repressor-like, C-terminal domain	F: TetR_C_11_like_1	ECOD (1.6)
F [auth E]	TetR_N	e5xazE2	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: TetR_N	ECOD (1.6)
F [auth E]	TetR_C_11_like_1	e5xazE1	A: alpha bundles	X: Tetracyclin repressor-like, C-terminal domain (From Topology)	H: Tetracyclin repressor-like, C-terminal domain (From Topology)	T: Tetracyclin repressor-like, C-terminal domain	F: TetR_C_11_like_1	ECOD (1.6)
E [auth D]	TetR_N	e5xazD2	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: TetR_N	ECOD (1.6)
E [auth D]	TetR_C_11_like_1	e5xazD1	A: alpha bundles	X: Tetracyclin repressor-like, C-terminal domain (From Topology)	H: Tetracyclin repressor-like, C-terminal domain (From Topology)	T: Tetracyclin repressor-like, C-terminal domain	F: TetR_C_11_like_1	ECOD (1.6)
D [auth C]	TetR_N	e5xazC1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: TetR_N	ECOD (1.6)
D [auth C]	TetR_C_11_like_1	e5xazC2	A: alpha bundles	X: Tetracyclin repressor-like, C-terminal domain (From Topology)	H: Tetracyclin repressor-like, C-terminal domain (From Topology)	T: Tetracyclin repressor-like, C-terminal domain	F: TetR_C_11_like_1	ECOD (1.6)
C [auth B]	TetR_N	e5xazB2	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: TetR_N	ECOD (1.6)
C [auth B]	TetR_C_11_like_1	e5xazB1	A: alpha bundles	X: Tetracyclin repressor-like, C-terminal domain (From Topology)	H: Tetracyclin repressor-like, C-terminal domain (From Topology)	T: Tetracyclin repressor-like, C-terminal domain	F: TetR_C_11_like_1	ECOD (1.6)
B [auth H]	TetR_N	e5xazH2	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: TetR_N	ECOD (1.6)
B [auth H]	TetR_C_11_like_1	e5xazH1	A: alpha bundles	X: Tetracyclin repressor-like, C-terminal domain (From Topology)	H: Tetracyclin repressor-like, C-terminal domain (From Topology)	T: Tetracyclin repressor-like, C-terminal domain	F: TetR_C_11_like_1	ECOD (1.6)
A	TetR_N	e5xazA1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: TetR_N	ECOD (1.6)
A	TetR_C_11_like_1	e5xazA2	A: alpha bundles	X: Tetracyclin repressor-like, C-terminal domain (From Topology)	H: Tetracyclin repressor-like, C-terminal domain (From Topology)	T: Tetracyclin repressor-like, C-terminal domain	F: TetR_C_11_like_1	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B [auth H], C [auth B], D [auth C], E [auth D], A, B [auth H], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H [auth G]	Gamma-butyrolactone receptor protein	DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding transcription regulator activity DNA-binding transcription factor activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B [auth H], C [auth B], D [auth C], E [auth D], A, B [auth H], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H [auth G]	IPR023772	DNA-binding HTH domain, TetR-type, conserved site	Conserved Site
A, B [auth H], C [auth B], D [auth C], E [auth D], A, B [auth H], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H [auth G]	IPR009057	Homedomain-like superfamily	Homologous Superfamily
A, B [auth H], C [auth B], D [auth C], E [auth D], A, B [auth H], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H [auth G]	IPR047923	A-factor receptor protein-like	Family
A, B [auth H], C [auth B], D [auth C], E [auth D], A, B [auth H], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H [auth G]	IPR050109	HTH-type, TetR-like transcriptional regulator	Family
A, B [auth H], C [auth B], D [auth C], E [auth D], A, B [auth H], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H [auth G]	IPR054126	CprB tetracyclin repressor-like, C-terminal domain	Domain
A, B [auth H], C [auth B], D [auth C], E [auth D], A, B [auth H], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H [auth G]	IPR001647	DNA-binding HTH domain, TetR-type	Domain
A, B [auth H], C [auth B], D [auth C], E [auth D], A, B [auth H], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H [auth G]	IPR036271	Tetracyclin repressor-like, C-terminal domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.