5XJM
Complex structure of angiotensin II type 2 receptor with Fab
External Resource: Annotation
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- IMGT Antibody Annotation
- SAbDab Antibody Annotation
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Pharos: Disease Associations
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
- Protein Modification Annotation
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | 7tm_1_1,Cytochrom_B562_1 | e5xjmA2 | A: alpha bundles | X: Family A G protein-coupled receptor-like (From Topology) | H: Family A G protein-coupled receptor-like (From Topology) | T: Family A G protein-coupled receptor-like | F: 7tm_1_1,Cytochrom_B562_1 | ECOD (1.6) |
A | 7tm_1_1 | e5xjmA1 | A: alpha bundles | X: Four-helical up-and-down bundle | H: Cytochromes (From Topology) | T: Cytochromes | F: 7tm_1_1 | ECOD (1.6) |
B [auth H] | C1-set_1 | e5xjmH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
B [auth H] | V-set_10 | e5xjmH2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_10 | ECOD (1.6) |
C [auth L] | C1-set_4 | e5xjmL2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
C [auth L] | V-set | e5xjmL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B [auth H] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
C [auth L] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
B [auth H] | Antibody Fab Fragment | VH-CH1 | Mus musculus (house mouse) | IGHV5-17*02, IGHJ3*01, IGHG2B*02 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-2B_KAPPA | IMGT (202449-0) |
C [auth L] | Antibody Fab Fragment | L-KAPPA | Mus musculus (house mouse) | IGKV4-55*01, IGKJ5*01, IGKC*01, IGKC*02 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-2B_KAPPA | IMGT (202449-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
B [auth H] | Heavy Chain | IGHV5 | - | type-2 angiotensin ii receptor,soluble cytochrome b562,type-2 angiotensin ii receptor | SAbDab (2024-12-13) |
C [auth L] | Light Chain | IGKV4 | Kappa | type-2 angiotensin ii receptor,soluble cytochrome b562,type-2 angiotensin ii receptor | SAbDab (2024-12-13) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF07361 | Cytochrome b562 (Cytochrom_B562) | Cytochrome b562 | - | Family | |
PF00001 | 7 transmembrane receptor (rhodopsin family) (7tm_1) | 7 transmembrane receptor (rhodopsin family) | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR010980 | Cytochrome c/b562 | Homologous Superfamily | |
IPR009155 | Cytochrome b562 | Family | |
IPR000147 | Angiotensin II receptor type 2 | Family | |
IPR000276 | G protein-coupled receptor, rhodopsin-like | Family | |
IPR017452 | GPCR, rhodopsin-like, 7TM | Domain | |
IPR050119 | C-C chemokine receptor type 1-9-like | Family | |
IPR000248 | Angiotensin II receptor family | Family | |
D [auth B] | IPR000215 | Serpin family | Family |
D [auth B] | IPR042178 | Serpin superfamily, domain 1 | Homologous Superfamily |
D [auth B] | IPR023795 | Serpin, conserved site | Conserved Site |
D [auth B] | IPR033834 | Angiotensinogen, serpin domain | Domain |
D [auth B] | IPR036186 | Serpin superfamily | Homologous Superfamily |
D [auth B] | IPR000227 | Angiotensinogen | Family |
D [auth B] | IPR023796 | Serpin domain | Domain |
D [auth B] | IPR042185 | Serpin superfamily, domain 2 | Homologous Superfamily |
Pharos: Disease Associations Pharos Homepage Annotation
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Rhodopsin-like receptors and pumps | G-protein coupled receptors, family A |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | G Protein-Coupled Receptors: Class A | Angiotensin II type 2 receptor in complex with s-AngII |
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
D [auth B] | SAR | Parent Component: GLY :  AA0063 :  N-methylglycine MOD:00072 |