Annotations: 5XVO

E. fae Cas1-Cas2/prespacer/target ternary complex revealing DNA sampling and half-integration states

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
N	CRISPR_Cas2	e5xvoN1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: CRISPR_Cas2	ECOD (v295.2)
M	CRISPR_Cas2	e5xvoM1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: CRISPR_Cas2	ECOD (v295.2)
F	CRISPR_Cas2	e5xvoF1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: CRISPR_Cas2	ECOD (v295.2)
E	CRISPR_Cas2	e5xvoE1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: CRISPR_Cas2	ECOD (v295.2)
L	WD40	e5xvoL1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: WD40	ECOD (v295.2)
K	WD40	e5xvoK1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: WD40	ECOD (v295.2)
J	WD40	e5xvoJ1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: WD40	ECOD (v295.2)
I	WD40	e5xvoI1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: WD40	ECOD (v295.2)
D	WD40	e5xvoD1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: WD40	ECOD (v295.2)
C	WD40	e5xvoC1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: WD40	ECOD (v295.2)
B	WD40	e5xvoB1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: WD40	ECOD (v295.2)
A	WD40	e5xvoA1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: WD40	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
R	DNA (69-MER)	-	-	-
Q	DNA (46-MER)	-	-	-
H	DNA (5'-D(PCPCPGPAP*G)-3')	-	-	-
G, O, P	DNA (28-MER)	-	-	-
E, F, M, N	CRISPR-associated endoribonuclease Cas2	endonuclease activity nuclease activity catalytic activity, acting on RNA RNA endonuclease activity catalytic activity, acting on a nucleic acid RNA nuclease activity catalytic activity cation binding ion binding binding metal ion binding small molecule binding	biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus maintenance of CRISPR repeat elements chromosome organization primary metabolic process DNA metabolic process biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus maintenance of CRISPR repeat elements chromosome organization primary metabolic process DNA metabolic process maintenance of DNA repeat elements nucleic acid metabolic process cellular component organization nucleobase-containing compound metabolic process organelle organization cellular process metabolic process cellular component organization or biogenesis macromolecule metabolic process	-
A, B, C, D, I A, B, C, D, I, J, K, L	CRISPR-associated endonuclease Cas1	DNA endonuclease activity endonuclease activity catalytic activity, acting on DNA nuclease activity catalytic activity, acting on a nucleic acid catalytic activity DNA nuclease activity binding nucleic acid binding cation binding ion binding metal ion binding small molecule binding	biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus maintenance of CRISPR repeat elements chromosome organization primary metabolic process DNA metabolic process biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus maintenance of CRISPR repeat elements chromosome organization primary metabolic process DNA metabolic process maintenance of DNA repeat elements nucleic acid metabolic process cellular component organization nucleobase-containing compound metabolic process organelle organization cellular process metabolic process cellular component organization or biogenesis macromolecule metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E, F, M, N	IPR019199	Virulence-associated protein D / CRISPR associated protein Cas2	Family
E, F, M, N	IPR021127	CRISPR-associated endonuclease Cas2	Family
A, B, C, D, I A, B, C, D, I, J, K, L	IPR002729	CRISPR-associated protein Cas1	Family
A, B, C, D, I A, B, C, D, I, J, K, L	IPR019855	CRISPR-associated protein Cas1, NMENI subtype	Family
A, B, C, D, I A, B, C, D, I, J, K, L	IPR042206	CRISPR-associated endonuclease Cas1, C-terminal domain	Homologous Superfamily
A, B, C, D, I A, B, C, D, I, J, K, L	IPR050646	CRISPR-associated endonuclease Cas1	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

5XVO | pdb_00005xvo

E. fae Cas1-Cas2/prespacer/target ternary complex revealing DNA sampling and half-integration states

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage