5ZVT

Structure of RNA polymerase complex and genome within a dsRNA virus provides insights into the mechanisms of transcription and assembly

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
AA [auth Q]	Reovirus_M2_1st	e5zvtQ1	A: a+b complex topology	X: a+b domain in membrane penetration protein mu1 (From Topology)	H: a+b domain in membrane penetration protein mu1 (From Topology)	T: a+b domain in membrane penetration protein mu1	F: Reovirus_M2_1st	ECOD (1.6)
CA [auth S]	Reovirus_M2_1st	e5zvtS1	A: a+b complex topology	X: a+b domain in membrane penetration protein mu1 (From Topology)	H: a+b domain in membrane penetration protein mu1 (From Topology)	T: a+b domain in membrane penetration protein mu1	F: Reovirus_M2_1st	ECOD (1.6)
K [auth A]	Reovirus_M2_1st	e5zvtA1	A: a+b complex topology	X: a+b domain in membrane penetration protein mu1 (From Topology)	H: a+b domain in membrane penetration protein mu1 (From Topology)	T: a+b domain in membrane penetration protein mu1	F: Reovirus_M2_1st	ECOD (1.6)
M [auth C]	Reovirus_M2_1st	e5zvtC1	A: a+b complex topology	X: a+b domain in membrane penetration protein mu1 (From Topology)	H: a+b domain in membrane penetration protein mu1 (From Topology)	T: a+b domain in membrane penetration protein mu1	F: Reovirus_M2_1st	ECOD (1.6)
O [auth E]	Reovirus_M2_1st	e5zvtE1	A: a+b complex topology	X: a+b domain in membrane penetration protein mu1 (From Topology)	H: a+b domain in membrane penetration protein mu1 (From Topology)	T: a+b domain in membrane penetration protein mu1	F: Reovirus_M2_1st	ECOD (1.6)
Q [auth G]	Reovirus_M2_1st	e5zvtG1	A: a+b complex topology	X: a+b domain in membrane penetration protein mu1 (From Topology)	H: a+b domain in membrane penetration protein mu1 (From Topology)	T: a+b domain in membrane penetration protein mu1	F: Reovirus_M2_1st	ECOD (1.6)
S [auth I]	Reovirus_M2_1st	e5zvtI1	A: a+b complex topology	X: a+b domain in membrane penetration protein mu1 (From Topology)	H: a+b domain in membrane penetration protein mu1 (From Topology)	T: a+b domain in membrane penetration protein mu1	F: Reovirus_M2_1st	ECOD (1.6)
U [auth K]	Reovirus_M2_1st	e5zvtK1	A: a+b complex topology	X: a+b domain in membrane penetration protein mu1 (From Topology)	H: a+b domain in membrane penetration protein mu1 (From Topology)	T: a+b domain in membrane penetration protein mu1	F: Reovirus_M2_1st	ECOD (1.6)
W [auth M]	Reovirus_M2_1st	e5zvtM1	A: a+b complex topology	X: a+b domain in membrane penetration protein mu1 (From Topology)	H: a+b domain in membrane penetration protein mu1 (From Topology)	T: a+b domain in membrane penetration protein mu1	F: Reovirus_M2_1st	ECOD (1.6)
Y [auth O]	Reovirus_M2_1st	e5zvtO1	A: a+b complex topology	X: a+b domain in membrane penetration protein mu1 (From Topology)	H: a+b domain in membrane penetration protein mu1 (From Topology)	T: a+b domain in membrane penetration protein mu1	F: Reovirus_M2_1st	ECOD (1.6)
BA [auth R]	Reovirus_M2_2nd	e5zvtR3	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in membrane penetration protein mu1 (From Topology)	T: Jelly-roll domain in membrane penetration protein mu1	F: Reovirus_M2_2nd	ECOD (1.6)
BA [auth R]	Reovirus_M2_3rd	e5zvtR1	A: alpha arrays	X: Alpha-helical domain in membrane penetration protein mu1 (From Topology)	H: Alpha-helical domain in membrane penetration protein mu1 (From Topology)	T: Alpha-helical domain in membrane penetration protein mu1	F: Reovirus_M2_3rd	ECOD (1.6)
BA [auth R]	Reovirus_M2_1st	e5zvtR2	A: a+b complex topology	X: a+b domain in membrane penetration protein mu1 (From Topology)	H: a+b domain in membrane penetration protein mu1 (From Topology)	T: a+b domain in membrane penetration protein mu1	F: Reovirus_M2_1st	ECOD (1.6)
DA [auth T]	Reovirus_M2_2nd	e5zvtT1	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in membrane penetration protein mu1 (From Topology)	T: Jelly-roll domain in membrane penetration protein mu1	F: Reovirus_M2_2nd	ECOD (1.6)
DA [auth T]	Reovirus_M2_3rd	e5zvtT3	A: alpha arrays	X: Alpha-helical domain in membrane penetration protein mu1 (From Topology)	H: Alpha-helical domain in membrane penetration protein mu1 (From Topology)	T: Alpha-helical domain in membrane penetration protein mu1	F: Reovirus_M2_3rd	ECOD (1.6)
DA [auth T]	Reovirus_M2_1st	e5zvtT2	A: a+b complex topology	X: a+b domain in membrane penetration protein mu1 (From Topology)	H: a+b domain in membrane penetration protein mu1 (From Topology)	T: a+b domain in membrane penetration protein mu1	F: Reovirus_M2_1st	ECOD (1.6)
L [auth B]	Reovirus_M2_2nd	e5zvtB2	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in membrane penetration protein mu1 (From Topology)	T: Jelly-roll domain in membrane penetration protein mu1	F: Reovirus_M2_2nd	ECOD (1.6)
L [auth B]	Reovirus_M2_3rd	e5zvtB1	A: alpha arrays	X: Alpha-helical domain in membrane penetration protein mu1 (From Topology)	H: Alpha-helical domain in membrane penetration protein mu1 (From Topology)	T: Alpha-helical domain in membrane penetration protein mu1	F: Reovirus_M2_3rd	ECOD (1.6)
L [auth B]	Reovirus_M2_1st	e5zvtB3	A: a+b complex topology	X: a+b domain in membrane penetration protein mu1 (From Topology)	H: a+b domain in membrane penetration protein mu1 (From Topology)	T: a+b domain in membrane penetration protein mu1	F: Reovirus_M2_1st	ECOD (1.6)
N [auth D]	Reovirus_M2_2nd	e5zvtD1	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in membrane penetration protein mu1 (From Topology)	T: Jelly-roll domain in membrane penetration protein mu1	F: Reovirus_M2_2nd	ECOD (1.6)
N [auth D]	Reovirus_M2_3rd	e5zvtD3	A: alpha arrays	X: Alpha-helical domain in membrane penetration protein mu1 (From Topology)	H: Alpha-helical domain in membrane penetration protein mu1 (From Topology)	T: Alpha-helical domain in membrane penetration protein mu1	F: Reovirus_M2_3rd	ECOD (1.6)
N [auth D]	Reovirus_M2_1st	e5zvtD2	A: a+b complex topology	X: a+b domain in membrane penetration protein mu1 (From Topology)	H: a+b domain in membrane penetration protein mu1 (From Topology)	T: a+b domain in membrane penetration protein mu1	F: Reovirus_M2_1st	ECOD (1.6)
P [auth F]	Reovirus_M2_2nd	e5zvtF1	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in membrane penetration protein mu1 (From Topology)	T: Jelly-roll domain in membrane penetration protein mu1	F: Reovirus_M2_2nd	ECOD (1.6)
P [auth F]	Reovirus_M2_3rd	e5zvtF3	A: alpha arrays	X: Alpha-helical domain in membrane penetration protein mu1 (From Topology)	H: Alpha-helical domain in membrane penetration protein mu1 (From Topology)	T: Alpha-helical domain in membrane penetration protein mu1	F: Reovirus_M2_3rd	ECOD (1.6)
P [auth F]	Reovirus_M2_1st	e5zvtF2	A: a+b complex topology	X: a+b domain in membrane penetration protein mu1 (From Topology)	H: a+b domain in membrane penetration protein mu1 (From Topology)	T: a+b domain in membrane penetration protein mu1	F: Reovirus_M2_1st	ECOD (1.6)
R [auth H]	Reovirus_M2_2nd	e5zvtH3	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in membrane penetration protein mu1 (From Topology)	T: Jelly-roll domain in membrane penetration protein mu1	F: Reovirus_M2_2nd	ECOD (1.6)
R [auth H]	Reovirus_M2_3rd	e5zvtH1	A: alpha arrays	X: Alpha-helical domain in membrane penetration protein mu1 (From Topology)	H: Alpha-helical domain in membrane penetration protein mu1 (From Topology)	T: Alpha-helical domain in membrane penetration protein mu1	F: Reovirus_M2_3rd	ECOD (1.6)
R [auth H]	Reovirus_M2_1st	e5zvtH2	A: a+b complex topology	X: a+b domain in membrane penetration protein mu1 (From Topology)	H: a+b domain in membrane penetration protein mu1 (From Topology)	T: a+b domain in membrane penetration protein mu1	F: Reovirus_M2_1st	ECOD (1.6)
T [auth J]	Reovirus_M2_2nd	e5zvtJ1	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in membrane penetration protein mu1 (From Topology)	T: Jelly-roll domain in membrane penetration protein mu1	F: Reovirus_M2_2nd	ECOD (1.6)
T [auth J]	Reovirus_M2_3rd	e5zvtJ2	A: alpha arrays	X: Alpha-helical domain in membrane penetration protein mu1 (From Topology)	H: Alpha-helical domain in membrane penetration protein mu1 (From Topology)	T: Alpha-helical domain in membrane penetration protein mu1	F: Reovirus_M2_3rd	ECOD (1.6)
T [auth J]	Reovirus_M2_1st	e5zvtJ3	A: a+b complex topology	X: a+b domain in membrane penetration protein mu1 (From Topology)	H: a+b domain in membrane penetration protein mu1 (From Topology)	T: a+b domain in membrane penetration protein mu1	F: Reovirus_M2_1st	ECOD (1.6)
V [auth L]	Reovirus_M2_2nd	e5zvtL3	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in membrane penetration protein mu1 (From Topology)	T: Jelly-roll domain in membrane penetration protein mu1	F: Reovirus_M2_2nd	ECOD (1.6)
V [auth L]	Reovirus_M2_3rd	e5zvtL2	A: alpha arrays	X: Alpha-helical domain in membrane penetration protein mu1 (From Topology)	H: Alpha-helical domain in membrane penetration protein mu1 (From Topology)	T: Alpha-helical domain in membrane penetration protein mu1	F: Reovirus_M2_3rd	ECOD (1.6)
V [auth L]	Reovirus_M2_1st	e5zvtL1	A: a+b complex topology	X: a+b domain in membrane penetration protein mu1 (From Topology)	H: a+b domain in membrane penetration protein mu1 (From Topology)	T: a+b domain in membrane penetration protein mu1	F: Reovirus_M2_1st	ECOD (1.6)
X [auth N]	Reovirus_M2_2nd	e5zvtN1	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in membrane penetration protein mu1 (From Topology)	T: Jelly-roll domain in membrane penetration protein mu1	F: Reovirus_M2_2nd	ECOD (1.6)
X [auth N]	Reovirus_M2_3rd	e5zvtN2	A: alpha arrays	X: Alpha-helical domain in membrane penetration protein mu1 (From Topology)	H: Alpha-helical domain in membrane penetration protein mu1 (From Topology)	T: Alpha-helical domain in membrane penetration protein mu1	F: Reovirus_M2_3rd	ECOD (1.6)
X [auth N]	Reovirus_M2_1st	e5zvtN3	A: a+b complex topology	X: a+b domain in membrane penetration protein mu1 (From Topology)	H: a+b domain in membrane penetration protein mu1 (From Topology)	T: a+b domain in membrane penetration protein mu1	F: Reovirus_M2_1st	ECOD (1.6)
Z [auth P]	Reovirus_M2_2nd	e5zvtP3	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in membrane penetration protein mu1 (From Topology)	T: Jelly-roll domain in membrane penetration protein mu1	F: Reovirus_M2_2nd	ECOD (1.6)
Z [auth P]	Reovirus_M2_3rd	e5zvtP1	A: alpha arrays	X: Alpha-helical domain in membrane penetration protein mu1 (From Topology)	H: Alpha-helical domain in membrane penetration protein mu1 (From Topology)	T: Alpha-helical domain in membrane penetration protein mu1	F: Reovirus_M2_3rd	ECOD (1.6)
Z [auth P]	Reovirus_M2_1st	e5zvtP2	A: a+b complex topology	X: a+b domain in membrane penetration protein mu1 (From Topology)	H: a+b domain in membrane penetration protein mu1 (From Topology)	T: a+b domain in membrane penetration protein mu1	F: Reovirus_M2_1st	ECOD (1.6)
EA [auth U]	Sigma_1_2	e5zvtU1	A: alpha complex topology	X: Core protein VP6 (From Topology)	H: Core protein VP6 (From Topology)	T: Core protein VP6	F: Sigma_1_2	ECOD (1.6)
FA [auth V]	Sigma_1_2	e5zvtV1	A: alpha complex topology	X: Core protein VP6 (From Topology)	H: Core protein VP6 (From Topology)	T: Core protein VP6	F: Sigma_1_2	ECOD (1.6)
GA [auth W]	Reovirus_L2_6th	e5zvtW2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Reovirus_L2_6th	ECOD (1.6)
GA [auth W]	Reovirus_L2_7th	e5zvtW4	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Reovirus_L2_7th	ECOD (1.6)
GA [auth W]	Reovirus_L2_8th	e5zvtW5	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Reovirus_L2_8th	ECOD (1.6)
GA [auth W]	Reovirus_L2_4th	e5zvtW6	A: a+b two layers	X: ferredoxin-like domain in VP1 (From Topology)	H: ferredoxin-like domain in VP1 (From Topology)	T: ferredoxin-like domain in VP1	F: Reovirus_L2_4th	ECOD (1.6)
GA [auth W]	Reovirus_L2_2nd	e5zvtW3	A: a+b three layers	X: HIT-like	H: HIT-related (From Topology)	T: HIT-related	F: Reovirus_L2_2nd	ECOD (1.6)
GA [auth W]	Reovirus_L2_1st	e5zvtW1	A: a+b complex topology	X: Rotavirus NSP2 fragment, N-terminal domain (From Topology)	H: Rotavirus NSP2 fragment, N-terminal domain (From Topology)	T: Rotavirus NSP2 fragment, N-terminal domain	F: Reovirus_L2_1st	ECOD (1.6)
GA [auth W]	Reovirus_L2_3rd	e5zvtW8	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: Reovirus_L2_3rd	ECOD (1.6)
GA [auth W]	Reovirus_L2_5th	e5zvtW7	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: Reovirus_L2_5th	ECOD (1.6)
HA [auth X]	lambda-1	e5zvtX1	A: a+b complex topology	X: Inner layer core protein p3-related (From Topology)	H: Inner layer core protein p3-related (From Topology)	T: Inner layer core protein p3-related	F: lambda-1	ECOD (1.6)
IA [auth Y]	lambda-1	e5zvtY1	A: a+b complex topology	X: Inner layer core protein p3-related (From Topology)	H: Inner layer core protein p3-related (From Topology)	T: Inner layer core protein p3-related	F: lambda-1	ECOD (1.6)
IA [auth Y]	zf-C2H2_6	e5zvtY2	A: few secondary structure elements	X: beta-beta-alpha zinc fingers	H: beta-beta-alpha zinc fingers (From Topology)	T: beta-beta-alpha zinc fingers	F: zf-C2H2_6	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
BA [auth R]	1.10.2050.10	Mainly Alpha	Orthogonal Bundle	Protein mu-1, chain B, domain 3	Protein mu-1, chain B, domain 3	CATH (4.3.0)
BA [auth R]	2.60.120.420	Mainly Beta	Sandwich	Jelly Rolls	Membrane penetration protein mu1, Chain B, domain 4	CATH (4.3.0)
DA [auth T]	1.10.2050.10	Mainly Alpha	Orthogonal Bundle	Protein mu-1, chain B, domain 3	Protein mu-1, chain B, domain 3	CATH (4.3.0)
DA [auth T]	2.60.120.420	Mainly Beta	Sandwich	Jelly Rolls	Membrane penetration protein mu1, Chain B, domain 4	CATH (4.3.0)
L [auth B]	1.10.2050.10	Mainly Alpha	Orthogonal Bundle	Protein mu-1, chain B, domain 3	Protein mu-1, chain B, domain 3	CATH (4.3.0)
L [auth B]	2.60.120.420	Mainly Beta	Sandwich	Jelly Rolls	Membrane penetration protein mu1, Chain B, domain 4	CATH (4.3.0)
N [auth D]	1.10.2050.10	Mainly Alpha	Orthogonal Bundle	Protein mu-1, chain B, domain 3	Protein mu-1, chain B, domain 3	CATH (4.3.0)
N [auth D]	2.60.120.420	Mainly Beta	Sandwich	Jelly Rolls	Membrane penetration protein mu1, Chain B, domain 4	CATH (4.3.0)
P [auth F]	1.10.2050.10	Mainly Alpha	Orthogonal Bundle	Protein mu-1, chain B, domain 3	Protein mu-1, chain B, domain 3	CATH (4.3.0)
P [auth F]	2.60.120.420	Mainly Beta	Sandwich	Jelly Rolls	Membrane penetration protein mu1, Chain B, domain 4	CATH (4.3.0)
R [auth H]	1.10.2050.10	Mainly Alpha	Orthogonal Bundle	Protein mu-1, chain B, domain 3	Protein mu-1, chain B, domain 3	CATH (4.3.0)
R [auth H]	2.60.120.420	Mainly Beta	Sandwich	Jelly Rolls	Membrane penetration protein mu1, Chain B, domain 4	CATH (4.3.0)
T [auth J]	1.10.2050.10	Mainly Alpha	Orthogonal Bundle	Protein mu-1, chain B, domain 3	Protein mu-1, chain B, domain 3	CATH (4.3.0)
T [auth J]	2.60.120.420	Mainly Beta	Sandwich	Jelly Rolls	Membrane penetration protein mu1, Chain B, domain 4	CATH (4.3.0)
V [auth L]	1.10.2050.10	Mainly Alpha	Orthogonal Bundle	Protein mu-1, chain B, domain 3	Protein mu-1, chain B, domain 3	CATH (4.3.0)
V [auth L]	2.60.120.420	Mainly Beta	Sandwich	Jelly Rolls	Membrane penetration protein mu1, Chain B, domain 4	CATH (4.3.0)
X [auth N]	1.10.2050.10	Mainly Alpha	Orthogonal Bundle	Protein mu-1, chain B, domain 3	Protein mu-1, chain B, domain 3	CATH (4.3.0)
X [auth N]	2.60.120.420	Mainly Beta	Sandwich	Jelly Rolls	Membrane penetration protein mu1, Chain B, domain 4	CATH (4.3.0)
Z [auth P]	1.10.2050.10	Mainly Alpha	Orthogonal Bundle	Protein mu-1, chain B, domain 3	Protein mu-1, chain B, domain 3	CATH (4.3.0)
Z [auth P]	2.60.120.420	Mainly Beta	Sandwich	Jelly Rolls	Membrane penetration protein mu1, Chain B, domain 4	CATH (4.3.0)
EA [auth U]	1.10.287.1520	Mainly Alpha	Orthogonal Bundle	Helix Hairpins		CATH (4.3.0)
FA [auth V]	1.10.287.1520	Mainly Alpha	Orthogonal Bundle	Helix Hairpins		CATH (4.3.0)
GA [auth W]	3.90.1810.10	Alpha Beta	Alpha-Beta Complex	Reovirus components fold	Reovirus components	CATH (4.3.0)
GA [auth W]	3.55.60.10	Alpha Beta	3-Layer(bab) Sandwich	Reovirus components fold	Reovirus components	CATH (4.3.0)
GA [auth W]	3.40.50.10760	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Reovirus core	CATH (4.3.0)
GA [auth W]	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
GA [auth W]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

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5ZVT

Structure of RNA polymerase complex and genome within a dsRNA virus provides insights into the mechanisms of transcription and assembly

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Domain Annotation: CATH CATH Database Homepage