5FFO
Integrin alpha V beta 6 in complex with pro-TGF-beta
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Integrin alpha N-terminal domain | 8041564 | 3000314 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Integrin domains | 8055305 | 3002062 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Integrin domains | 8055305 | 3002062 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Integrin alpha N-terminal domain | 8041564 | 3000314 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | pro-TGF beta-like | 8089966 | 3002405 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Cystine-knot cytokines | 8038779 | 3000846 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Cystine-knot cytokines | 8038779 | 3000846 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | pro-TGF beta-like | 8089966 | 3002405 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | pro-TGF beta-like | 8089966 | 3002405 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | pro-TGF beta-like | 8089966 | 3002405 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Cystine-knot cytokines | 8038779 | 3000846 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Integrin_alpha2_1st | e5ffoA2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Integrin_alpha2_1st | ECOD (1.6) |
A | FG-GAP_1st | e5ffoA1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: FG-GAP_1st | ECOD (1.6) |
E | Integrin_alpha2_1st | e5ffoE1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Integrin_alpha2_1st | ECOD (1.6) |
E | FG-GAP_1st | e5ffoE2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: FG-GAP_1st | ECOD (1.6) |
B | Integrin_beta | e5ffoB1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: vWA-like | F: Integrin_beta | ECOD (1.6) |
F | Integrin_beta | e5ffoF1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: vWA-like | F: Integrin_beta | ECOD (1.6) |
C | TGFb_propeptide | e5ffoC1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: TGFb_propeptide | ECOD (1.6) |
C | TGF_beta | e5ffoC2 | A: few secondary structure elements | X: Cystine-knot cytokines (From Topology) | H: Cystine-knot cytokines (From Topology) | T: Cystine-knot cytokines | F: TGF_beta | ECOD (1.6) |
D | TGFb_propeptide | e5ffoD2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: TGFb_propeptide | ECOD (1.6) |
D | TGF_beta | e5ffoD1 | A: few secondary structure elements | X: Cystine-knot cytokines (From Topology) | H: Cystine-knot cytokines (From Topology) | T: Cystine-knot cytokines | F: TGF_beta | ECOD (1.6) |
G | TGFb_propeptide | e5ffoG1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: TGFb_propeptide | ECOD (1.6) |
G | TGF_beta | e5ffoG2 | A: few secondary structure elements | X: Cystine-knot cytokines (From Topology) | H: Cystine-knot cytokines (From Topology) | T: Cystine-knot cytokines | F: TGF_beta | ECOD (1.6) |
H | TGFb_propeptide | e5ffoH1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: TGFb_propeptide | ECOD (1.6) |
H | TGF_beta | e5ffoH2 | A: few secondary structure elements | X: Cystine-knot cytokines (From Topology) | H: Cystine-knot cytokines (From Topology) | T: Cystine-knot cytokines | F: TGF_beta | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.130.10.130 | Mainly Beta | 7 Propeller | Methylamine Dehydrogenase | Chain H | CATH (4.3.0) |
A | 2.60.40.1460 | Mainly Beta | Sandwich | Immunoglobulin-like | Integrin domains. Chain A, domain 2 | CATH (4.3.0) |
E | 2.130.10.130 | Mainly Beta | 7 Propeller | Methylamine Dehydrogenase | Chain H | CATH (4.3.0) |
E | 2.60.40.1460 | Mainly Beta | Sandwich | Immunoglobulin-like | Integrin domains. Chain A, domain 2 | CATH (4.3.0) |
B | 3.40.50.410 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | von Willebrand factor, type A domain | CATH (4.3.0) |
F | 3.40.50.410 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | von Willebrand factor, type A domain | CATH (4.3.0) |
C | 2.60.120.970 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
D | 2.60.120.970 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
G | 2.60.120.970 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
H | 2.60.120.970 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01839 | FG-GAP repeat (FG-GAP) | FG-GAP repeat | - | Repeat | |
PF08441 | Integrin alpha Ig-like domain 1 (Integrin_A_Ig_1) | Integrin alpha Ig-like domain 1 | This domain is found in integrin alpha and integrin alpha precursors to the C terminus of a number of Pfam:PF01839 repeats and to the N-terminus of the Pfam:PF00357 cytoplasmic region. This region is composed of an immunoglobulin-like domain. | Domain | |
PF00688 | TGF-beta propeptide (TGFb_propeptide) | TGF-beta propeptide | - | Family | |
PF00019 | Transforming growth factor beta like domain (TGF_beta) | Transforming growth factor beta like domain | - | Domain |