Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
A [auth D]d5k59d_ Membrane and cell surface proteins and peptides Leukocidin-like Leukocidin-like automated matches automated matches (Staphylococcus aureus subsp. aureus USA300 ) [TaxId: 367830 ], SCOPe (2.08)
Cd5k59c_ Membrane and cell surface proteins and peptides Leukocidin-like Leukocidin-like automated matches automated matches (Staphylococcus aureus subsp. aureus USA300 ) [TaxId: 367830 ], SCOPe (2.08)
Bd5k59b_ Membrane and cell surface proteins and peptides Leukocidin-like Leukocidin-like automated matches automated matches (Staphylococcus aureus subsp. aureus USA300 ) [TaxId: 367830 ], SCOPe (2.08)
D [auth A]d5k59a_ Membrane and cell surface proteins and peptides Leukocidin-like Leukocidin-like automated matches automated matches (Staphylococcus aureus subsp. aureus USA300 ) [TaxId: 367830 ], SCOPe (2.08)
E [auth H]d5k59h_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
G [auth E]d5k59e_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
F [auth L]d5k59l2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
F [auth L]d5k59l1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
H [auth F]d5k59f2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
H [auth F]d5k59f1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth D]SCOP2B SuperfamilyLeukocidin-like 8099272 3000256 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyLeukocidin-like 8099272 3000256 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyLeukocidin-like 8074050 3000256 SCOP2B (2022-06-29)
D [auth A]SCOP2 FamilyLeukocidin (pore-forming toxin) 8074049 4003101 SCOP2 (2022-06-29)
D [auth A]SCOP2 SuperfamilyLeukocidin-like 8074050 3000256 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth D]Leukocidine5k59D1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Leukocidin-like (From Topology)T: Leukocidin-likeF: LeukocidinECOD (1.6)
CLeukocidine5k59C1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Leukocidin-like (From Topology)T: Leukocidin-likeF: LeukocidinECOD (1.6)
BLeukocidine5k59B1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Leukocidin-like (From Topology)T: Leukocidin-likeF: LeukocidinECOD (1.6)
D [auth A]Leukocidine5k59A1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Leukocidin-like (From Topology)T: Leukocidin-likeF: LeukocidinECOD (1.6)
E [auth H]V-set_8e5k59H2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_8ECOD (1.6)
E [auth H]C1-set_1e5k59H1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-set_1ECOD (1.6)
G [auth E]V-set_8e5k59E1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_8ECOD (1.6)
G [auth E]C1-set_1e5k59E2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-set_1ECOD (1.6)
F [auth L]C1-set_4e5k59L1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-set_4ECOD (1.6)
F [auth L]V-sete5k59L2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-setECOD (1.6)
H [auth F]C1-set_4e5k59F1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-set_4ECOD (1.6)
H [auth F]V-sete5k59F2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-setECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
E [auth H],
G [auth E]
Antibody Fab Fragment VH-CH1 Homo sapiens (human) IGHV4-39*01, IGHV4-39*06, IGHV4-39*07, IGHJ6*04, IGHG1*01, IGHG1*02, IGHG1*04, IGHG1*05 V-DOMAIN VH, C-DOMAIN CH1 IG FAB-GAMMA-1_KAPPA IMGT (202444-0)
F [auth L],
H [auth F]
Antibody Fab Fragment L-KAPPA Homo sapiens (human) IGKV1-39*01, IGKV1D-39*01, IGKJ4*01, IGKJ4*02, IGKC*01 V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA IG FAB-GAMMA-1_KAPPA IMGT (202444-0)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
E [auth H],
G [auth E]
Heavy ChainIGHV4 -uncharacterized leukocidin-like protein 1SAbDab (2024-11-08)
F [auth L],
H [auth F]
Light ChainIGKV1 Kappauncharacterized leukocidin-like protein 1SAbDab (2024-11-08)

Thera-SAbDab Antibody Annotation Thera-SAbDab Database Homepage

ChainNameTargetProvenance Source
E [auth H],
G [auth E]
Berlimatoxumab Staphylococcus aureus Toxin ATherapeutic SAbDab (2024-11-08)
F [auth L],
H [auth F]
Berlimatoxumab Staphylococcus aureus Toxin ATherapeutic SAbDab (2024-11-08)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth D],
C
PF07968Leukocidin/Hemolysin toxin family (Leukocidin)Leukocidin/Hemolysin toxin family- Domain
B,
D [auth A]
PF07968Leukocidin/Hemolysin toxin family (Leukocidin)Leukocidin/Hemolysin toxin family- Domain