Structure of full-length human AMPK (a2b1g1) in complex with a small molecule activator SC4
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Pharos: Disease Associations
- Protein Modification Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| F | d6b1uf1 | Alpha and beta proteins (a+b) | CBS-domain pair | CBS-domain pair | CBS-domain pair | 5'-AMP-activated protein kinase subunit gamma-1, AMPKg | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
| E | d6b1ue1 | Alpha and beta proteins (a+b) | CBS-domain pair | CBS-domain pair | CBS-domain pair | 5'-AMP-activated protein kinase subunit gamma-1, AMPKg | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C | VP4_haemagglut | e6b1uC1 | A: a/b three-layered sandwiches | X: Phosphorylase/hydrolase-like | H: Peptidyl-tRNA hydrolase-like | T: Peptidyl-tRNA hydrolase-like | F: VP4_haemagglut | ECOD (v294.1) |
| A | Amino_oxidase | e6b1uA1 | A: a/b three-layered sandwiches | X: Phosphorylase/hydrolase-like | H: Peptidyl-tRNA hydrolase-like | T: Peptidyl-tRNA hydrolase-like | F: Amino_oxidase | ECOD (v294.1) |
| F | Amino_oxidase | e6b1uF1 | A: a/b three-layered sandwiches | X: Phosphorylase/hydrolase-like | H: Peptidyl-tRNA hydrolase-like | T: Peptidyl-tRNA hydrolase-like | F: Amino_oxidase | ECOD (v294.1) |
| E | tRNA-synt_1_2 | e6b1uE1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: tRNA-synt_1_2 | ECOD (v294.1) |
| D | tRNA-synt_1_2 | e6b1uD1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: tRNA-synt_1_2 | ECOD (v294.1) |
| B | Amino_oxidase | e6b1uB1 | A: a/b three-layered sandwiches | X: Phosphorylase/hydrolase-like | H: Peptidyl-tRNA hydrolase-like | T: Peptidyl-tRNA hydrolase-like | F: Amino_oxidase | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| C | 1.10.510.10 | Mainly Alpha | Orthogonal Bundle | Transferase(Phosphotransferase) | domain 1 | CATH (utative) |
| A | 1.10.510.10 | Mainly Alpha | Orthogonal Bundle | Transferase(Phosphotransferase) | domain 1 | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF21147 | AMP-activated protein kinase, alpha subunit, autoinhibitory domain (AMPK_alpha_AID) | AMP-activated protein kinase, alpha subunit, autoinhibitory domain | This domain is found in the catalytic subunit (alpha) of the enzymatic complex AMP-activated protein kinase (AMPK). This protein is organised into an N-terminal kinase domain (KD, Pfam:PF00069) and a regulatory C-terminus, which contains an autoinhib ... | Domain | |
| PF00069 | Protein kinase domain (Pkinase) | Protein kinase domain | Domain | ||
| PF16579 | Adenylate sensor of SNF1-like protein kinase (AdenylateSensor) | Adenylate sensor of SNF1-like protein kinase | AdenylateSensor is a family found at the C-terminus of SNF1-like protein kinases snf other protein-kinases [1]. | Domain | |
| PF00571 | CBS domain (CBS) | CBS domain | CBS domains are small intracellular modules that pair together to form a stable globular domain [2]. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain [6]. CBS domains have been shown to bind ligands ... | Domain | |
| PF04739 | 5'-AMP-activated protein kinase beta subunit, interaction domain (AMPKBI) | 5'-AMP-activated protein kinase beta subunit, interaction domain | - | Family | |
| PF16561 | Glycogen recognition site of AMP-activated protein kinase (AMPK1_CBM) | Glycogen recognition site of AMP-activated protein kinase | - | Family |














