6B3Q
Cryo-EM structure of human insulin degrading enzyme in complex with insulin
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth a] | SCOP2B Superfamily | Insulin-like | 8038024 | 3000307 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Peptidase_M16_M_C | e6b3qA2 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: Peptidase_M16_M_C | ECOD (1.6) |
A | Peptidase_M16_M_N | e6b3qA1 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: Peptidase_M16_M_N | ECOD (1.6) |
A | Peptidase_M16_C_2 | e6b3qA3 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: Peptidase_M16_C_2 | ECOD (1.6) |
A | Peptidase_M16 | e6b3qA4 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: Peptidase_M16 | ECOD (1.6) |
B | Peptidase_M16_M_C | e6b3qB2 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: Peptidase_M16_M_C | ECOD (1.6) |
B | Peptidase_M16_M_N | e6b3qB1 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: Peptidase_M16_M_N | ECOD (1.6) |
B | Peptidase_M16_C_2 | e6b3qB4 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: Peptidase_M16_C_2 | ECOD (1.6) |
B | Peptidase_M16 | e6b3qB3 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: Peptidase_M16 | ECOD (1.6) |
C [auth a] | Insulin | e6b3qa1 | A: few secondary structure elements | X: Insulin-like (From Topology) | H: Insulin-like (From Topology) | T: Insulin-like | F: Insulin | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.830.10 | Alpha Beta | 2-Layer Sandwich | Cytochrome Bc1 Complex | Chain A, domain 1 | CATH (4.3.0) |
B | 3.30.830.10 | Alpha Beta | 2-Layer Sandwich | Cytochrome Bc1 Complex | Chain A, domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF05193 | Peptidase M16 inactive domain (Peptidase_M16_C) | Peptidase M16 inactive domain | Peptidase M16 consists of two structurally related domains. One is the active peptidase, whereas the other is inactive. The two domains hold the substrate like a clamp [1]. | Domain | |
PF16187 | Middle or third domain of peptidase_M16 (Peptidase_M16_M) | Middle or third domain of peptidase_M16 | - | Family | |
PF00675 | Insulinase (Peptidase family M16) (Peptidase_M16) | Insulinase (Peptidase family M16) | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR011249 | Metalloenzyme, LuxS/M16 peptidase-like | Homologous Superfamily | |
IPR050626 | Peptidase M16 | Family | |
IPR032632 | Peptidase M16, middle/third domain | Domain | |
IPR001431 | Peptidase M16, zinc-binding site | Binding Site | |
IPR007863 | Peptidase M16, C-terminal | Domain | |
IPR054734 | Coenzyme PQQ synthesis protein F-like, C-terminal lobe, domain 4 | Domain | |
IPR011765 | Peptidase M16, N-terminal | Domain | |
C [auth a], D [auth b] | IPR004825 | Insulin | Family |
C [auth a], D [auth b] | IPR022353 | Insulin, conserved site | Conserved Site |
C [auth a], D [auth b] | IPR036438 | Insulin-like superfamily | Homologous Superfamily |
C [auth a], D [auth b] | IPR022352 | Insulin family | Family |
C [auth a], D [auth b] | IPR016179 | Insulin-like | Domain |