6B9J | pdb_00006b9j

Structure of vaccinia virus D8 protein bound to human Fab vv138

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
IMGT Antibody Annotation
SAbDab Antibody Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F [auth B]	d6b9jb1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	(Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
F [auth B]	d6b9jb2	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	C1 set domains (antibody constant domain-like)	automated matches	(Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C [auth L]	d6b9jl1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	(Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C [auth L]	d6b9jl2	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	C1 set domains (antibody constant domain-like)	automated matches	(Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
E [auth A]	d6b9ja_	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	(Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B [auth H]	d6b9jh_	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	(Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D [auth Y]	d6b9jy1	All beta proteins	Carbonic anhydrase	Carbonic anhydrase	automated matches	automated matches	(Orthopoxvirus vaccinia ) [TaxId: 10245 ],	SCOPe (2.08)
D [auth Y]	d6b9jy2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Orthopoxvirus vaccinia ) [TaxId: 10245 ],	SCOPe (2.08)
A [auth X]	d6b9jx1	All beta proteins	Carbonic anhydrase	Carbonic anhydrase	automated matches	automated matches	(Orthopoxvirus vaccinia ) [TaxId: 10245 ],	SCOPe (2.08)
A [auth X]	d6b9jx2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Orthopoxvirus vaccinia ) [TaxId: 10245 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D [auth Y]	SCOP2B Superfamily	Carbonic anhydrase	8065133	3001672	SCOP2B (2022-06-29)
A [auth X]	SCOP2 Family	Carbonic anhydrase	8065132	4002732	SCOP2 (2022-06-29)
A [auth X]	SCOP2 Superfamily	Carbonic anhydrase	8065133	3001672	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F [auth B]		e6b9jB1	A: SH3	X: SH3	H: SH3	T: SH3_2	F:	ECOD (20:10:01)
C [auth L]		e6b9jL1	A: SH3	X: SH3	H: SH3	T: SH3_2	F:	ECOD (20:10:01)
E [auth A]		e6b9jA1	A: SH3	X: SH3	H: SH3	T: SH3_2	F:	ECOD (20:10:01)
B [auth H]		e6b9jH1	A: SH3	X: SH3	H: SH3	T: SH3_2	F:	ECOD (20:10:01)
D [auth Y]		e6b9jY1	A: SH3	X: SH3	H: SH3	T: SH3_2	F:	ECOD (20:10:01)
A [auth X]		e6b9jX1	A: SH3	X: SH3	H: SH3	T: SH3_2	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F [auth B]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
C [auth L]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
E [auth A]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
B [auth H]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
D [auth Y]	3.10.200.10	Alpha Beta	Roll	Carbonic Anhydrase II	Alpha carbonic anhydrase	CATH (4.3.0)
A [auth X]	3.10.200.10	Alpha Beta	Roll	Carbonic Anhydrase II	Alpha carbonic anhydrase	CATH (4.3.0)

IMGT Antibody Annotation IMGT Database Homepage

Chain	Protein Name	Description	Organism Name	Gene Allele Name(s)	Domain Name(s)	Receptor Type	Receptor Description	Provenance Source
C [auth L], F [auth B]	Fab vv138	L-KAPPA	Homo sapiens (human)	IGKV3-2001, IGKJ401, IGKC*01	V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA	IG	FAB-GAMMA-1_KAPPA	IMGT (202609-0)
B [auth H], E [auth A]	Fab vv138	VH-CH1	Homo sapiens (human)	IGHV1-69-201, IGHJ101, IGHJ501, IGHJ502, IGHJ301, IGHJ302, IGHJ201, IGHG101, IGHG102, IGHG104, IGHG1*05	V-DOMAIN VH, C-DOMAIN CH1	IG	FAB-GAMMA-1_KAPPA	IMGT (202609-0)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
C [auth L], F [auth B]	Light Chain	IGKV3	Kappa	imv membrane protein	SAbDab (2026-03-13)
B [auth H], E [auth A]	Heavy Chain	IGHV1	-	imv membrane protein	SAbDab (2026-03-13)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth L], F [auth B]	Fab vv138 Light chain	-	-	-
B [auth H], E [auth A]	Fab vv138 Heavy chain	-	-	-
A [auth X], D [auth Y]	IMV membrane protein	cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding carbonate dehydratase activity hydro-lyase activity lyase activity catalytic activity carbon-oxygen lyase activity	-	virion component virion membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth X], D [auth Y]	IPR001148	Alpha carbonic anhydrase domain	Domain
A [auth X], D [auth Y]	IPR036398	Alpha carbonic anhydrase domain superfamily	Homologous Superfamily
A [auth X], D [auth Y]	IPR023561	Carbonic anhydrase, alpha-class	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.