6BCU
Cryo-EM structure of the activated RHEB-mTORC1 refined to 3.4 angstrom
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) | 8036936 | 3001600 | SCOP2B (2022-06-29) |
F [auth B] | SCOP2B Superfamily | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) | 8036936 | 3001600 | SCOP2B (2022-06-29) |
E [auth S] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8057364 | 3002022 | SCOP2B (2022-06-29) |
J [auth R] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8057364 | 3002022 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF08771 | e6bcuA4 | A: alpha bundles | X: Four-helical up-and-down bundle | H: FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) (From Topology) | T: FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) | F: PF08771 | ECOD (1.6) |
A | PF02259 | e6bcuA1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF02259 | ECOD (1.6) |
A | PF11865 | e6bcuA3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF11865 | ECOD (1.6) |
A | PF00454,PF02260 | e6bcuA2 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: Protein kinase | F: PF00454,PF02260 | ECOD (1.6) |
F [auth B] | PF08771 | e6bcuB4 | A: alpha bundles | X: Four-helical up-and-down bundle | H: FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) (From Topology) | T: FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) | F: PF08771 | ECOD (1.6) |
F [auth B] | PF02259 | e6bcuB1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF02259 | ECOD (1.6) |
F [auth B] | PF11865 | e6bcuB3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF11865 | ECOD (1.6) |
F [auth B] | PF00454,PF02260 | e6bcuB2 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: Protein kinase | F: PF00454,PF02260 | ECOD (1.6) |
G [auth E] | PF00400 | e6bcuE1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF00400 | ECOD (1.6) |
B [auth D] | PF00400 | e6bcuD1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF00400 | ECOD (1.6) |
C [auth W] | PF00400 | e6bcuW2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF00400 | ECOD (1.6) |
C [auth W] | PF02985 | e6bcuW1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF02985 | ECOD (1.6) |
C [auth W] | PF14538 | e6bcuW3 | A: a/b three-layered sandwiches | X: Caspase-like (From Topology) | H: Caspase-like (From Topology) | T: Caspase-like | F: PF14538 | ECOD (1.6) |
H [auth Y] | PF00400 | e6bcuY2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF00400 | ECOD (1.6) |
H [auth Y] | PF02985 | e6bcuY1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF02985 | ECOD (1.6) |
H [auth Y] | PF14538 | e6bcuY3 | A: a/b three-layered sandwiches | X: Caspase-like (From Topology) | H: Caspase-like (From Topology) | T: Caspase-like | F: PF14538 | ECOD (1.6) |
E [auth S] | PF00071 | e6bcuS1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00071 | ECOD (1.6) |
J [auth R] | PF00071 | e6bcuR1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00071 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, F [auth B] | PF02260 | FATC domain (FATC) | FATC domain | - | Family |
A, F [auth B] | PF08771 | FKBP12-rapamycin binding domain (FRB_dom) | FKBP12-rapamycin binding domain | The macrolide antibiotic rapamycin and the cytosol protein FKBP12 can form a complex which specifically inhibits the TORC1 complex, leading to growth arrest. The FKBP12-rapamycin complex interferes with TORC1 function by binding to the FKBP12-rapa ... | Domain |
A, F [auth B] | PF00454 | Phosphatidylinositol 3- and 4-kinase (PI3_PI4_kinase) | Phosphatidylinositol 3- and 4-kinase | - | Family |
A, F [auth B] | PF11865 | Domain of unknown function (DUF3385) (DUF3385) | Domain of unknown function (DUF3385) | - | Repeat |
A, F [auth B] | PF02259 | FAT domain (FAT) | FAT domain | - | Repeat |
B [auth D], G [auth E] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
C [auth W], H [auth Y] | PF14538 | Raptor N-terminal CASPase like domain (Raptor_N) | Raptor N-terminal CASPase like domain | This domain is found at the N-terminus of the Raptor protein. It has been identified to have a CASPase like structure [1]. It conserves the characteristic cys/his dyad of the caspases suggesting it may have a peptidase activity. | Domain |
C [auth W], H [auth Y] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
C [auth W], H [auth Y] | PF02985 | HEAT repeat (HEAT) | HEAT repeat | - | Repeat |
D [auth X], I [auth Z] | PF05456 | Eukaryotic translation initiation factor 4E binding protein (EIF4EBP) (eIF_4EBP) | Eukaryotic translation initiation factor 4E binding protein (EIF4EBP) | - | Family |
E [auth S], J [auth R] | PF00071 | Ras family (Ras) | Ras family | Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motil ... | Domain |