6CIJ

Cryo-EM structure of mouse RAG1/2 HFC complex containing partial HMGB1 linker(3.9 A)


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ARAG1_1ste6cijA1 A: alpha arraysX: HTHH: HTHT: Ribbon-helix-helixF: RAG1_1stECOD (1.6)
ARAG1_3rde6cijA3 A: alpha bundlesX: V(D)J recombination-activating protein 1 helical bundle domain (From Topology)H: V(D)J recombination-activating protein 1 helical bundle domain (From Topology)T: V(D)J recombination-activating protein 1 helical bundle domainF: RAG1_3rdECOD (1.6)
ARAG1_2nde6cijA2 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: RAG1_2ndECOD (1.6)
B [auth C]RAG1_1ste6cijC1 A: alpha arraysX: HTHH: HTHT: Ribbon-helix-helixF: RAG1_1stECOD (1.6)
B [auth C]RAG1_3rde6cijC2 A: alpha bundlesX: V(D)J recombination-activating protein 1 helical bundle domain (From Topology)H: V(D)J recombination-activating protein 1 helical bundle domain (From Topology)T: V(D)J recombination-activating protein 1 helical bundle domainF: RAG1_3rdECOD (1.6)
B [auth C]RAG1_2nde6cijC3 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: RAG1_2ndECOD (1.6)
G [auth N]HMG_boxe6cijN1 A: alpha arraysX: HMG-box (From Topology)H: HMG-box (From Topology)T: HMG-boxF: HMG_boxECOD (1.6)
I [auth D]RAG2e6cijD1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 6-bladedF: RAG2ECOD (1.6)
J [auth B]RAG2e6cijB1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 6-bladedF: RAG2ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
G [auth N]PF00505HMG (high mobility group) box (HMG_box)HMG (high mobility group) box- Domain
I [auth D],
J [auth B]
PF03089Recombination activating protein 2 (RAG2)Recombination activating protein 2- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
B [auth C]
V(D)J recombination-activating protein 1
C [auth F]DNA (46-MER)---
D [auth I]DNA (5'-D(*GP*AP*TP*CP*TP*GP*GP*CP*CP*TP*GP*TP*CP*TP*TP*A)-3')---
E [auth J]DNA (5'-D(P*CP*TP*GP*GP*AP*TP*CP*TP*GP*GP*CP*CP*TP*GP*TP*CP*TP*TP*A)-3')---
F [auth G]DNA (60-MER)---
G [auth N]High mobility group protein B1
H [auth L]DNA (30-MER)---
I [auth D],
J [auth B]
V(D)J recombination-activating protein 2
K [auth M]DNA (41-MER)---