6E4P

Structure of the T. brucei RRM domain in complex with RNA


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth A]SCOP2B SuperfamilyRNA-binding domain, RBD 8086518 3000110 SCOP2B (2022-06-29)
D [auth B]SCOP2B SuperfamilyRNA-binding domain, RBD 8086518 3000110 SCOP2B (2022-06-29)
E [auth C]SCOP2B SuperfamilyRNA-binding domain, RBD 8086518 3000110 SCOP2B (2022-06-29)
F [auth D]SCOP2B SuperfamilyRNA-binding domain, RBD 8086518 3000110 SCOP2B (2022-06-29)
G [auth E]SCOP2B SuperfamilyRNA-binding domain, RBD 8086518 3000110 SCOP2B (2022-06-29)
H [auth F]SCOP2B SuperfamilyRNA-binding domain, RBD 8086518 3000110 SCOP2B (2022-06-29)
I [auth G]SCOP2B SuperfamilyRNA-binding domain, RBD 8086518 3000110 SCOP2B (2022-06-29)
J [auth H]SCOP2B SuperfamilyRNA-binding domain, RBD 8086518 3000110 SCOP2B (2022-06-29)
K [auth I]SCOP2B SuperfamilyRNA-binding domain, RBD 8086518 3000110 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth A]RRM_1_1e6e4pA1 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: RRM_1_1ECOD (1.6)
D [auth B]RRM_1_1e6e4pB1 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: RRM_1_1ECOD (1.6)
E [auth C]RRM_1_1e6e4pC1 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: RRM_1_1ECOD (1.6)
F [auth D]RRM_1_1e6e4pD1 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: RRM_1_1ECOD (1.6)
G [auth E]RRM_1_1e6e4pE1 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: RRM_1_1ECOD (1.6)
H [auth F]RRM_1_1e6e4pF1 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: RRM_1_1ECOD (1.6)
I [auth G]RRM_1_1e6e4pG1 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: RRM_1_1ECOD (1.6)
J [auth H]RRM_1_1e6e4pH1 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: RRM_1_1ECOD (1.6)
K [auth I]RRM_1_1e6e4pI1 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: RRM_1_1ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth J],
B [auth K]
RNA (5'-R(P*UP*UP*UP*U)-3')---
RNA-binding protein, putative