6E4P
Structure of the T. brucei RRM domain in complex with RNA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth A] | SCOP2B Superfamily | RNA-binding domain, RBD | 8086518 | 3000110 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2B Superfamily | RNA-binding domain, RBD | 8086518 | 3000110 | SCOP2B (2022-06-29) |
E [auth C] | SCOP2B Superfamily | RNA-binding domain, RBD | 8086518 | 3000110 | SCOP2B (2022-06-29) |
F [auth D] | SCOP2B Superfamily | RNA-binding domain, RBD | 8086518 | 3000110 | SCOP2B (2022-06-29) |
G [auth E] | SCOP2B Superfamily | RNA-binding domain, RBD | 8086518 | 3000110 | SCOP2B (2022-06-29) |
H [auth F] | SCOP2B Superfamily | RNA-binding domain, RBD | 8086518 | 3000110 | SCOP2B (2022-06-29) |
I [auth G] | SCOP2B Superfamily | RNA-binding domain, RBD | 8086518 | 3000110 | SCOP2B (2022-06-29) |
J [auth H] | SCOP2B Superfamily | RNA-binding domain, RBD | 8086518 | 3000110 | SCOP2B (2022-06-29) |
K [auth I] | SCOP2B Superfamily | RNA-binding domain, RBD | 8086518 | 3000110 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth A] | RRM_1_1 | e6e4pA1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1_1 | ECOD (1.6) |
D [auth B] | RRM_1_1 | e6e4pB1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1_1 | ECOD (1.6) |
E [auth C] | RRM_1_1 | e6e4pC1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1_1 | ECOD (1.6) |
F [auth D] | RRM_1_1 | e6e4pD1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1_1 | ECOD (1.6) |
G [auth E] | RRM_1_1 | e6e4pE1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1_1 | ECOD (1.6) |
H [auth F] | RRM_1_1 | e6e4pF1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1_1 | ECOD (1.6) |
I [auth G] | RRM_1_1 | e6e4pG1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1_1 | ECOD (1.6) |
J [auth H] | RRM_1_1 | e6e4pH1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1_1 | ECOD (1.6) |
K [auth I] | RRM_1_1 | e6e4pI1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00076 | RNA recognition motif (RRM_1) | RNA recognition motif | The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000504 | RNA recognition motif domain | Domain | |
IPR050374 | RRT5/SRSF/Splicing Factor SR | Family | |
IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily | Homologous Superfamily | |
IPR035979 | RNA-binding domain superfamily | Homologous Superfamily |