6E7D | pdb_00006e7d

Structure of the inhibitory NKR-P1B receptor bound to the host-encoded ligand, Clr-b

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
X	d6e7dx_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
W	d6e7dw_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
V	d6e7dv_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
U	d6e7du_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
T	d6e7dt_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
S	d6e7ds_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
R	d6e7dr_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
Q	d6e7dq_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
P	d6e7dp_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
O	d6e7do1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
O	d6e7do2	Artifacts	Tags	Tags	Tags	C-terminal Tags	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
N	d6e7dn_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
M	d6e7dm1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
M	d6e7dm2	Artifacts	Tags	Tags	Tags	C-terminal Tags	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
L	d6e7dl_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
K	d6e7dk1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
K	d6e7dk2	Artifacts	Tags	Tags	Tags	C-terminal Tags	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
J	d6e7dj_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
I	d6e7di1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
I	d6e7di2	Artifacts	Tags	Tags	Tags	C-terminal Tags	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
H	d6e7dh_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
G	d6e7dg1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
G	d6e7dg2	Artifacts	Tags	Tags	Tags	C-terminal Tags	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
F	d6e7df_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
E	d6e7de_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
D	d6e7dd1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
D	d6e7dd2	Artifacts	Tags	Tags	Tags	C-terminal Tags	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
C	d6e7dc1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
C	d6e7dc2	Artifacts	Tags	Tags	Tags	C-terminal Tags	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
B	d6e7db_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
A	d6e7da1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
A	d6e7da2	Artifacts	Tags	Tags	Tags	C-terminal Tags	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
X	SCOP2B Superfamily	C-type lectin-like	8065452	3001261	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	C-type lectin-like	8065452	3001261	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	C-type lectin-like	8065452	3001261	SCOP2B (2022-06-29)
U	SCOP2 Family	C-type lectin domain	8065451	4002453	SCOP2 (2022-06-29)
U	SCOP2 Superfamily	C-type lectin-like	8065452	3001261	SCOP2 (2022-06-29)
T	SCOP2B Superfamily	C-type lectin-like	8065452	3001261	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	C-type lectin-like	8065452	3001261	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	C-type lectin-like	8065452	3001261	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	C-type lectin-like	8065452	3001261	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	C-type lectin-like	8065490	3001261	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	C-type lectin-like	8065490	3001261	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	C-type lectin-like	8065490	3001261	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	C-type lectin-like	8065490	3001261	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	C-type lectin-like	8065490	3001261	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	C-type lectin-like	8065490	3001261	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	C-type lectin-like	8065490	3001261	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	C-type lectin-like	8065490	3001261	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	C-type lectin-like	8065490	3001261	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	C-type lectin-like	8065490	3001261	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	C-type lectin-like	8065490	3001261	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	C-type lectin-like	8065490	3001261	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	C-type lectin-like	8065490	3001261	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	C-type lectin-like	8065490	3001261	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	C-type lectin-like	8065490	3001261	SCOP2B (2022-06-29)
A	SCOP2 Family	C-type lectin domain	8065489	4002453	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	C-type lectin-like	8065490	3001261	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
X	SH2	e6e7dX1	A: alpha bundles	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: SH2	ECOD (develop294)
W	SH2	e6e7dW1	A: alpha bundles	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: SH2	ECOD (develop294)
V	SH2	e6e7dV1	A: alpha bundles	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: SH2	ECOD (develop294)
U	SH2	e6e7dU1	A: alpha bundles	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: SH2	ECOD (develop294)
T	SH2	e6e7dT1	A: alpha bundles	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: SH2	ECOD (develop294)
S	Transglut_prok	e6e7dS1	A: alpha bundles	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Transglut_prok	ECOD (develop294)
R	SH2	e6e7dR1	A: alpha bundles	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: SH2	ECOD (develop294)
Q	SH2	e6e7dQ1	A: alpha bundles	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: SH2	ECOD (develop294)
P	SH2	e6e7dP1	A: alpha bundles	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: SH2	ECOD (develop294)
O	SH2	e6e7dO1	A: alpha bundles	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: SH2	ECOD (develop294)
N	SH2	e6e7dN1	A: alpha bundles	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: SH2	ECOD (develop294)
M	SH2	e6e7dM1	A: alpha bundles	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: SH2	ECOD (develop294)
L	SH2	e6e7dL1	A: alpha bundles	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: SH2	ECOD (develop294)
K	SH2	e6e7dK1	A: alpha bundles	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: SH2	ECOD (develop294)
J	SH2	e6e7dJ1	A: alpha bundles	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: SH2	ECOD (develop294)
I	SH2	e6e7dI1	A: alpha bundles	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: SH2	ECOD (develop294)
H	SH2	e6e7dH1	A: alpha bundles	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: SH2	ECOD (develop294)
G	SH2	e6e7dG1	A: alpha bundles	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: SH2	ECOD (develop294)
F	SH2	e6e7dF1	A: alpha bundles	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: SH2	ECOD (develop294)
E	Transglut_prok	e6e7dE1	A: alpha bundles	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Transglut_prok	ECOD (develop294)
D	SH2	e6e7dD1	A: alpha bundles	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: SH2	ECOD (develop294)
C	SH2	e6e7dC1	A: alpha bundles	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: SH2	ECOD (develop294)
B	SH2	e6e7dB1	A: alpha bundles	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: SH2	ECOD (develop294)
A	SH2	e6e7dA1	A: alpha bundles	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: SH2	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
X	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
W	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
V	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
U	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
T	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
S	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
R	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
Q	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
P	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
O	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
N	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
M	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
L	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
K	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
J	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
I	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
H	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
G	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
F	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
E	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
D	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
C	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
B	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
A	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
Q, R, S, T, U Q, R, S, T, U, V, W, X	PF00059	Lectin C-type domain (Lectin_C)	Lectin C-type domain	This family includes both long and short form C-type	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	PF00059	Lectin C-type domain (Lectin_C)	Lectin C-type domain	This family includes both long and short form C-type	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
Q, R, S, T, U Q, R, S, T, U, V, W, X	Killer cell lectin-like receptor subfamily B member 1B allele B	binding carbohydrate binding	-	cell periphery cellular anatomical structure plasma membrane membrane
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	C-type lectin domain family 2 member D	binding carbohydrate binding natural killer cell lectin-like receptor binding protein binding signaling receptor binding molecular transducer activity transmembrane signaling receptor activity signaling receptor activity	response to stimulus defense response response to stress cellular defense response regulation of immune effector process lymphocyte mediated immunity regulation of cellular process negative regulation of biological process negative regulation of lymphocyte mediated immunity response to biotic stimulus negative regulation of natural killer cell mediated immunity leukocyte mediated immunity regulation of immune system process natural killer cell mediated immunity response to stimulus defense response response to stress cellular defense response regulation of immune effector process lymphocyte mediated immunity regulation of cellular process negative regulation of biological process negative regulation of lymphocyte mediated immunity response to biotic stimulus negative regulation of natural killer cell mediated immunity leukocyte mediated immunity regulation of immune system process natural killer cell mediated immunity regulation of biological process regulation of natural killer cell mediated immunity immune response response to other organism regulation of innate immune response negative regulation of immune response negative regulation of immune effector process response to external stimulus leukocyte mediated cytotoxicity immune effector process regulation of leukocyte mediated immunity regulation of response to stimulus defense response to other organism negative regulation of response to external stimulus negative regulation of defense response natural killer cell mediated cytotoxicity regulation of immune response regulation of cell killing negative regulation of natural killer cell mediated cytotoxicity regulation of defense response regulation of response to biotic stimulus regulation of natural killer cell mediated cytotoxicity biological process involved in interspecies interaction between organisms regulation of response to external stimulus negative regulation of response to biotic stimulus protection from natural killer cell mediated cytotoxicity regulation of response to stress negative regulation of leukocyte mediated cytotoxicity negative regulation of cellular process innate immune response response to external biotic stimulus negative regulation of cell killing negative regulation of response to stimulus regulation of leukocyte mediated cytotoxicity biological regulation defense response to symbiont regulation of lymphocyte mediated immunity negative regulation of immune system process immune system process cellular process negative regulation of leukocyte mediated immunity cell killing negative regulation of innate immune response myeloid leukocyte differentiation regulation of leukocyte differentiation multicellular organismal process cellular developmental process regulation of developmental process cell development regulation of cell differentiation regulation of cell development regulation of osteoclast differentiation multicellular organism development cell differentiation osteoclast differentiation anatomical structure development regulation of multicellular organismal process negative regulation of cell differentiation negative regulation of hemopoiesis developmental process regulation of multicellular organismal development negative regulation of leukocyte differentiation hemopoiesis regulation of myeloid cell differentiation negative regulation of developmental process regulation of myeloid leukocyte differentiation negative regulation of myeloid cell differentiation negative regulation of osteoclast differentiation negative regulation of myeloid leukocyte differentiation negative regulation of cell development myeloid cell differentiation regulation of hemopoiesis negative regulation of multicellular organismal process leukocyte differentiation	cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle endoplasmic reticulum cytoplasm intracellular membrane-bounded organelle cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle endoplasmic reticulum cytoplasm intracellular membrane-bounded organelle endomembrane system

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
Q, R, S, T, U Q, R, S, T, U, V, W, X	IPR001304	C-type lectin-like	Domain
Q, R, S, T, U Q, R, S, T, U, V, W, X	IPR016186	C-type lectin-like/link domain superfamily	Homologous Superfamily
Q, R, S, T, U Q, R, S, T, U, V, W, X	IPR033992	Natural killer cell receptor-like, C-type lectin-like domain	Domain
Q, R, S, T, U Q, R, S, T, U, V, W, X	IPR051527	Killer cell lectin-like receptor subfamily B	Family
Q, R, S, T, U Q, R, S, T, U, V, W, X	IPR016187	C-type lectin fold	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR050828	C-type lectin and matrix domain-containing protein	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR016187	C-type lectin fold	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR001304	C-type lectin-like	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR016186	C-type lectin-like/link domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR033992	Natural killer cell receptor-like, C-type lectin-like domain	Domain