6EM3 | pdb_00006em3

State A architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
B [auth F]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8052917 3001378 SCOP2B (2022-06-29)
B [auth F]SCOP2B SuperfamilyRibosomal L30p/L7e protein, N-terminal domain-lke 8052916 3002152 SCOP2B (2022-06-29)
I [auth C]SCOP2B Superfamily60S ribosomal protein L4 C-terminal domain-like 8052815 3002143 SCOP2B (2022-06-29)
I [auth C]SCOP2B SuperfamilyRibosomal protein L4 8052816 3001146 SCOP2B (2022-06-29)
K [auth E]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8053109 3000334 SCOP2B (2022-06-29)
L [auth f]SCOP2B SuperfamilyTranslational proteins 8087451 3000811 SCOP2B (2022-06-29)
M [auth G]SCOP2B SuperfamilyL30e-like 8063962 3001739 SCOP2B (2022-06-29)
S [auth N]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8082481 3000210 SCOP2B (2022-06-29)
V [auth Q]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8095970 3001045 SCOP2B (2022-06-29)
X [auth Y]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8076760 3000334 SCOP2B (2022-06-29)
DA [auth o]SCOP2B SuperfamilyRNA-binding domain, RBD 8061969 3000110 SCOP2B (2022-06-29)
T [auth O]SCOP2B SuperfamilyRibosomal protein L13 8066053 3001134 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth F]Helicase_Ce6em3F1 A: alpha bundlesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF: Helicase_CECOD (develop294)
E [auth 5]Actine6em351 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
F [auth A]Actine6em3A1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
I [auth C]Actine6em3C2 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
I [auth C]Ald_deCOasee6em3C3 A: alpha bundlesX: Rubredoxin-likeH: Ferritin/Heme oxygenaseT: Heme oxygenase/Ribonucleotide reductaseF: Ald_deCOaseECOD (develop294)
J [auth e]Helicase_Ce6em3e1 A: alpha bundlesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF: Helicase_CECOD (develop294)
K [auth E]Actine6em3E1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
L [auth f]Helicase_Ce6em3f1 A: alpha bundlesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF: Helicase_CECOD (develop294)
M [auth G]Actine6em3G1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
N [auth h]Helicase_Ce6em3h1 A: alpha bundlesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF: Helicase_CECOD (develop294)
O [auth i]Actine6em3i1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
P [auth j]Actine6em3j1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
Q [auth L]Actine6em3L1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
R [auth M]Actine6em3M1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
S [auth N]Helicase_Ce6em3N1 A: alpha bundlesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF: Helicase_CECOD (develop294)
U [auth P]Helicase_Ce6em3P1 A: alpha bundlesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF: Helicase_CECOD (develop294)
V [auth Q]Actine6em3Q1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
W [auth S]Helicase_Ce6em3S1 A: alpha bundlesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF: Helicase_CECOD (develop294)
X [auth Y]Actine6em3Y1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
AA [auth D]Helicase_Ce6em3D1 A: alpha bundlesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF: Helicase_CECOD (develop294)
AA [auth D]Ribosomal_L22e6em3D2 A: alpha bundlesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF: Ribosomal_L22ECOD (develop294)
BA [auth K]Ribosomal_L22e6em3K1 A: alpha bundlesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF: Ribosomal_L22ECOD (develop294)
EA [auth t]Actine6em3t1 A: alpha bundlesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (develop294)
D [auth 4]NADHdhe6em341 A: alpha bundlesX: Family A G protein-coupled receptor-likeH: Sodium/proton antiporter subunits-likeT: NADH-quinone oxidoreductase subunit 8 (Nqo8)-relatedF: NADHdhECOD (develop294)
T [auth O]Helicase_Ce6em3O1 A: alpha bundlesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF: Helicase_CECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A [auth x]3.40.50.10480 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Brix domainCATH (utative)
C [auth 3]3.30.390.110 Alpha Beta 2-Layer Sandwich Enolase-like domain 1CATH (utative)
L [auth f]2.40.10.190 Mainly Beta Beta Barrel Thrombin, subunit H translation elongation factor selb, chain A, domain 4CATH (4.3.0)
M [auth G]3.30.1330.30 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30 Chain: ACATH (4.3.0)
N [auth h]6.10.250.3450 Special Helix non-globular Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)
O [auth i]1.10.10.1760 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Ribosomal protein L36CATH (4.3.0)
R [auth M]2.30.30.30 Mainly Beta Roll SH3 type barrels. CATH (4.3.0)
S [auth N]3.40.1120.10 Alpha Beta 3-Layer(aba) Sandwich Ribosomal protein L15e Ribosomal protein L15CATH (4.3.0)
V [auth Q]3.100.10.10 Alpha Beta Ribosomal Protein L15 Chain: K domain 2CATH (4.3.0)
W [auth S]3.10.20.10 Alpha Beta Roll Ubiquitin-like (UB roll) CATH (4.3.0)
X [auth Y]2.30.30.30 Mainly Beta Roll SH3 type barrels. CATH (4.3.0)
T [auth O]3.90.1180.10 Alpha Beta Alpha-Beta Complex Ribosomal Protein L13p Chain: ACATH (4.3.0)
T [auth O]1.20.5.4280 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth F]PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1]. Domain
B [auth F]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
B [auth F]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35AeThis entry represents the ribosomal eL33 previously known as L35A, eukaryotic and archaebacterial ribosomal proteins. Domain
C [auth 3]PF01778Ribosomal L28e protein family (Ribosomal_L28e)Ribosomal L28e protein family- Family
C [auth 3]PF04874Mak16 protein C-terminal region (Mak16)Mak16 protein C-terminal region- Family
F [auth A]PF04427Brix domain (Brix)Brix domainDomain
I [auth C]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins. Domain
I [auth C]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
K [auth E]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
K [auth E]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
M [auth G]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
R [auth M]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
R [auth M]PF00467KOW motif (KOW)KOW motif- Family
S [auth N]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
U [auth P]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
W [auth S]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. Domain
X [auth Y]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
X [auth Y]PF00467KOW motif (KOW)KOW motif- Family
AA [auth D]PF13959ATP-dependent rRNA helicase SPB4-like, C-terminal extension (CTE_SPB4)ATP-dependent rRNA helicase SPB4-like, C-terminal extensionThis short domain is found at the C-terminus of many helicase proteins, including ATP-dependent rRNA helicase SPB4 from Saccharomyces cerevisiae, which is involved in the biogenesis of 60S ribosomal subunits. SPB4 is organised into four domains: dual ...This short domain is found at the C-terminus of many helicase proteins, including ATP-dependent rRNA helicase SPB4 from Saccharomyces cerevisiae, which is involved in the biogenesis of 60S ribosomal subunits. SPB4 is organised into four domains: dual RecA domains (Pfam:PF00270 and Pfam:PF00271), a C-terminal extension (CTE, represented by this entry) and a C-terminal tail (Pfam:PF23681). This domain packs closely onto the catalytic core and engages the four nucleotides immediately 5' to those within the RNA binding pocket. It shows a mainly alpha- helical structure [1].
Domain
AA [auth D]PF00271Helicase conserved C-terminal domain (Helicase_C)Helicase conserved C-terminal domainThe Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Domain
BA [auth K]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10. Domain
T [auth O]PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Domain
T [auth O]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth x]Ribosome production factor 1
B [auth F]60S ribosomal protein L7-A
C [auth 3]Protein MAK16-
E [auth 5]Ribosome biogenesis protein NSA1-
F [auth A]Ribosome biogenesis protein BRX1
G [auth J]rRNA-processing protein EBP2
H [auth v]Nucleolar protein 16-
I [auth C]60S ribosomal protein L4-A
J [auth e]60S ribosomal protein L32
K [auth E]60S ribosomal protein L6-A
L [auth f]60S ribosomal protein L33-A
M [auth G]60S ribosomal protein L8-A
N [auth h]60S ribosomal protein L35-A
O [auth i]60S ribosomal protein L36-B
P [auth j]60S ribosomal protein L37-A
Q [auth L]60S ribosomal protein L13-A
R [auth M]60S ribosomal protein L14-A
S [auth N]60S ribosomal protein L15-A
U [auth P]60S ribosomal protein L17-A
V [auth Q]60S ribosomal protein L18-A
W [auth S]60S ribosomal protein L20-A
X [auth Y]60S ribosomal protein L26-A
Y [auth 1]25S ribosomal RNA---
Z [auth 2]5.8S ribosomal RNA---
AA [auth D]ATP-dependent RNA helicase HAS1
BA [auth K]Proteasome-interacting protein CIC1
CA [auth n]Pescadillo homolog
DA [auth o]Ribosome biogenesis protein 15
EA [auth t]Ribosome biogenesis protein RLP7
FA [auth 6]5.8S ribosomal RNA---
GA [auth B]Ribosome biogenesis protein ERB1
D [auth 4]Ribosomal RNA-processing protein 1-
T [auth O]60S ribosomal protein L16-A

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth x]IPR044281U3 snoRNP protein/Ribosome production factor 1Family
A [auth x]IPR007109Brix domainDomain
B [auth F]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
B [auth F]IPR035808Large ribosomal subunit protein uL30, eukaryota/archaeaDomain
B [auth F]IPR005998Large ribosomal subunit protein uL30, eukaryotaFamily
B [auth F]IPR039699Large ribosomal subunit protein uL30Family
B [auth F]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotaDomain
B [auth F]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
B [auth F]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
C [auth 3]IPR006958Mak16 proteinFamily
C [auth 3]IPR029004Ribosomal eL28/Mak16Domain
E [auth 5]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
E [auth 5]IPR037379WDR74/Nsa1Family
F [auth A]IPR026532Ribosome biogenesis protein BRX1Family
F [auth A]IPR007109Brix domainDomain
G [auth J]IPR008610Eukaryotic rRNA processingFamily
H [auth v]IPR019002Ribosome biogenesis protein Nop16Family
I [auth C]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
I [auth C]IPR002136Large ribosomal subunit protein uL4Family
I [auth C]IPR013000Large ribosomal subunit protein uL4, eukaryota/archaea, conserved siteConserved Site
I [auth C]IPR045240Large ribosomal subunit protein uL4, eukaryota/archaeaFamily
I [auth C]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
J [auth e]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
J [auth e]IPR001515Large ribosomal subunit protein eL32Family
J [auth e]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
K [auth E]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
K [auth E]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
K [auth E]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
K [auth E]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
K [auth E]IPR000915Large ribosomal subunit protein eL6Family
L [auth f]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
L [auth f]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
L [auth f]IPR001780Large ribosomal subunit protein eL33Family
L [auth f]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
M [auth G]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
M [auth G]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
M [auth G]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
M [auth G]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
M [auth G]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
M [auth G]IPR001921Large ribosomal subunit protein eL8, eukaryotaFamily
N [auth h]IPR001854Large ribosomal subunit protein uL29Family
N [auth h]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
N [auth h]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
N [auth h]IPR045059Large ribosomal subunit protein uL29, eukaryotaFamily
O [auth i]IPR000509Large ribosomal subunit protein eL36Family
O [auth i]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
P [auth j]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
P [auth j]IPR001569Large ribosomal subunit protein eL37Family
P [auth j]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
P [auth j]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
Q [auth L]IPR001380Large ribosomal subunit protein eL13Family
Q [auth L]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
R [auth M]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
R [auth M]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
R [auth M]IPR039660Large ribosomal subunit protein eL14Family
R [auth M]IPR002784Large ribosomal subunit protein eL14 domainDomain
R [auth M]IPR005824KOWDomain
S [auth N]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
S [auth N]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
S [auth N]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
S [auth N]IPR000439Large ribosomal subunit protein eL15Family
U [auth P]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
U [auth P]IPR005721Large ribosomal subunit protein uL22, eukaryota/archaeaFamily
U [auth P]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
U [auth P]IPR001063Large ribosomal subunit protein uL22Family
V [auth Q]IPR021131Large ribosomal subunit protein uL15/eL18Domain
V [auth Q]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
V [auth Q]IPR000039Large ribosomal subunit protein eL18Family
V [auth Q]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
W [auth S]IPR028877Large ribosomal subunit protein eL20Family
W [auth S]IPR023573Large ribosomal subunit protein eL20 domainDomain
W [auth S]IPR021138Large ribosomal subunit protein eL20, eukaryotaFamily
X [auth Y]IPR005756Large ribosomal subunit protein uL24, eukaryota_archaeaFamily
X [auth Y]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
X [auth Y]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
X [auth Y]IPR005824KOWDomain
X [auth Y]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
X [auth Y]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
AA [auth D]IPR000629ATP-dependent RNA helicase DEAD-box, conserved siteConserved Site
AA [auth D]IPR014014RNA helicase, DEAD-box type, Q motifDomain
AA [auth D]IPR025313ATP-dependent rRNA helicase SPB4-like, C-terminal extensionDomain
AA [auth D]IPR011545DEAD/DEAH-box helicase domainDomain
AA [auth D]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
AA [auth D]IPR001650Helicase, C-terminal domain-likeDomain
AA [auth D]IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
AA [auth D]IPR044773DDX18/Has1, DEAD-box helicase domainDomain
BA [auth K]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
BA [auth K]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
CA [auth n]IPR010613PescadilloFamily
CA [auth n]IPR001357BRCT domainDomain
CA [auth n]IPR036420BRCT domain superfamilyHomologous Superfamily
DA [auth o]IPR000504RNA recognition motif domainDomain
DA [auth o]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
DA [auth o]IPR034469Ribosome biogenesis protein 15, RNA recognition motifDomain
DA [auth o]IPR035979RNA-binding domain superfamilyHomologous Superfamily
EA [auth t]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
EA [auth t]IPR035808Large ribosomal subunit protein uL30, eukaryota/archaeaDomain
EA [auth t]IPR039699Large ribosomal subunit protein uL30Family
EA [auth t]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
EA [auth t]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
GA [auth B]IPR019775WD40 repeat, conserved siteConserved Site
GA [auth B]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
GA [auth B]IPR028598WD repeat BOP1/Erb1Family
GA [auth B]IPR001680WD40 repeatRepeat
GA [auth B]IPR012953BOP1, N-terminal domainDomain
GA [auth B]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
D [auth 4]IPR010301Ribosomal RNA processing protein 1Family
T [auth O]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
T [auth O]IPR005822Large ribosomal subunit protein uL13Family
T [auth O]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
T [auth O]IPR005755Large ribosomal subunit protein uL13, eukaryota/archaeaFamily