Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
HSCOP2B SuperfamilyvWA-like 8035579 3000832 SCOP2B (2022-06-29)
HSCOP2B SuperfamilySPOC domain-like 8035577 3000675 SCOP2B (2022-06-29)
FSCOP2B SuperfamilySPOC domain-like 8035577 3000675 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyvWA-like 8035579 3000832 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyvWA-like 8035579 3000832 SCOP2B (2022-06-29)
DSCOP2B SuperfamilySPOC domain-like 8035577 3000675 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyvWA-like 8035579 3000832 SCOP2B (2022-06-29)
BSCOP2B SuperfamilySPOC domain-like 8035577 3000675 SCOP2B (2022-06-29)
GSCOP2B SuperfamilySPOC domain-like 8035571 3000675 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyvWA-like 8035574 3000832 SCOP2B (2022-06-29)
ESCOP2B SuperfamilySPOC domain-like 8035571 3000675 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyvWA-like 8035574 3000832 SCOP2B (2022-06-29)
CSCOP2B SuperfamilySPOC domain-like 8035571 3000675 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyvWA-like 8035574 3000832 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyvWA-like 8035574 3000832 SCOP2B (2022-06-29)
ASCOP2B SuperfamilySPOC domain-like 8035571 3000675 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
He6erfH1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: HTHT: SH3F:ECOD (v294.1)
Fe6erfF1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: HTHT: SH3F:ECOD (v294.1)
De6erfD1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: HTHT: SH3F:ECOD (v294.1)
BTransglut_proke6erfB1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: HTHT: SH3F: Transglut_prokECOD (v294.1)
Ge6erfG1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: HTHT: SH3F:ECOD (v294.1)
Ee6erfE1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: HTHT: SH3F:ECOD (v294.1)
CTransglut_proke6erfC1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: HTHT: SH3F: Transglut_prokECOD (v294.1)
Ae6erfA1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: HTHT: SH3F:ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
H3.40.50.410 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold von Willebrand factor, type A domainCATH (utative)
F3.40.50.410 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold von Willebrand factor, type A domainCATH (utative)
D3.40.50.410 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold von Willebrand factor, type A domainCATH (4.3.0)
D2.40.290.10 Mainly Beta Beta Barrel Ku70 Chain: ACATH (4.3.0)
D1.10.1600.10 Mainly Alpha Orthogonal Bundle Ku70 Chain: ACATH (4.3.0)
B3.40.50.410 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold von Willebrand factor, type A domainCATH (4.3.0)
B2.40.290.10 Mainly Beta Beta Barrel Ku70 Chain: ACATH (4.3.0)
B1.10.1600.10 Mainly Alpha Orthogonal Bundle Ku70 Chain: ACATH (4.3.0)
G3.40.50.410 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold von Willebrand factor, type A domainCATH (4.3.0)
G2.40.290.10 Mainly Beta Beta Barrel Ku70 Chain: ACATH (4.3.0)
G4.10.970.10 Few Secondary Structures Irregular Ku70, bridge and pillars Ku70, bridge and pillarsCATH (4.3.0)
G1.10.1600.10 Mainly Alpha Orthogonal Bundle Ku70 Chain: ACATH (4.3.0)
E3.40.50.410 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold von Willebrand factor, type A domainCATH (4.3.0)
E2.40.290.10 Mainly Beta Beta Barrel Ku70 Chain: ACATH (4.3.0)
E4.10.970.10 Few Secondary Structures Irregular Ku70, bridge and pillars Ku70, bridge and pillarsCATH (4.3.0)
E1.10.1600.10 Mainly Alpha Orthogonal Bundle Ku70 Chain: ACATH (4.3.0)
C3.40.50.410 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold von Willebrand factor, type A domainCATH (4.3.0)
C2.40.290.10 Mainly Beta Beta Barrel Ku70 Chain: ACATH (4.3.0)
C4.10.970.10 Few Secondary Structures Irregular Ku70, bridge and pillars Ku70, bridge and pillarsCATH (4.3.0)
C1.10.1600.10 Mainly Alpha Orthogonal Bundle Ku70 Chain: ACATH (4.3.0)
A3.40.50.410 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold von Willebrand factor, type A domainCATH (4.3.0)
A2.40.290.10 Mainly Beta Beta Barrel Ku70 Chain: ACATH (4.3.0)
A4.10.970.10 Few Secondary Structures Irregular Ku70, bridge and pillars Ku70, bridge and pillarsCATH (4.3.0)
A1.10.1600.10 Mainly Alpha Orthogonal Bundle Ku70 Chain: ACATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B, D, F, H
PF02735Ku70/Ku80 beta-barrel domain (Ku)Ku70/Ku80 beta-barrel domainThe Ku heterodimer (composed of Ku70 Swiss:P12956 and Ku80 Swiss:P13010) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the central DNA-bi ...The Ku heterodimer (composed of Ku70 Swiss:P12956 and Ku80 Swiss:P13010) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the central DNA-binding beta-barrel domain. This domain is found in both the Ku70 Swiss:P12956 and Ku80 Swiss:P13010 proteins that form a DNA binding heterodimer [1].
Domain
B, D, F, H
PF03730Ku70/Ku80 C-terminal arm (Ku_C)Ku70/Ku80 C-terminal arm- Family
B, D, F, H
PF03731Ku70/Ku80 N-terminal alpha/beta domain (Ku_N)Ku70/Ku80 N-terminal alpha/beta domainThe Ku heterodimer (composed of Ku70 Swiss:P12956 and Ku80 Swiss:P13010) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the amino terminal ...The Ku heterodimer (composed of Ku70 Swiss:P12956 and Ku80 Swiss:P13010) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the amino terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [1].
Domain
A, C, E, G
PF02735Ku70/Ku80 beta-barrel domain (Ku)Ku70/Ku80 beta-barrel domainThe Ku heterodimer (composed of Ku70 Swiss:P12956 and Ku80 Swiss:P13010) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the central DNA-bi ...The Ku heterodimer (composed of Ku70 Swiss:P12956 and Ku80 Swiss:P13010) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the central DNA-binding beta-barrel domain. This domain is found in both the Ku70 Swiss:P12956 and Ku80 Swiss:P13010 proteins that form a DNA binding heterodimer [1].
Domain
A, C, E, G
PF03730Ku70/Ku80 C-terminal arm (Ku_C)Ku70/Ku80 C-terminal arm- Family
A, C, E, G
PF03731Ku70/Ku80 N-terminal alpha/beta domain (Ku_N)Ku70/Ku80 N-terminal alpha/beta domainThe Ku heterodimer (composed of Ku70 Swiss:P12956 and Ku80 Swiss:P13010) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the amino terminal ...The Ku heterodimer (composed of Ku70 Swiss:P12956 and Ku80 Swiss:P13010) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the amino terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Q, R, S, T
Aprataxin and PNK-like factor
J, L, N, P
DNA (34-MER)---
I, K, M, O
DNA (5'-D(*GP*TP*TP*TP*TP*TP*AP*GP*TP*TP*TP*AP*TP*TP*GP*GP*GP*CP*GP*CP*G)-3')---
B, D, F, H
X-ray repair cross-complementing protein 5
A, C, E, G
X-ray repair cross-complementing protein 6