6ESQ | pdb_00006esq

Structure of the acetoacetyl-CoA thiolase/HMG-CoA synthase complex from Methanothermococcus thermolithotrophicus soaked with acetyl-CoA

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L		e6esqL1	A: P-loop domains-like	X: Cas7-related	H: CRISPR-associated protein Cas7f/Csy3	T: F_bP_aldolase	F:	ECOD (20:10:01)
K		e6esqK1	A: P-loop domains-like	X: Cas7-related	H: CRISPR-associated protein Cas7f/Csy3	T: F_bP_aldolase	F:	ECOD (20:10:01)
J		e6esqJ1	A: P-loop domains-like	X: Cas7-related	H: CRISPR-associated protein Cas7f/Csy3	T: Peptidase_M42	F:	ECOD (20:10:01)
I		e6esqI1	A: P-loop domains-like	X: Cas7-related	H: CRISPR-associated protein Cas7f/Csy3	T: F_bP_aldolase	F:	ECOD (20:10:01)
H		e6esqH1	A: P-loop domains-like	X: Cas7-related	H: CRISPR-associated protein Cas7f/Csy3	T: F_bP_aldolase	F:	ECOD (20:10:01)
G		e6esqG1	A: P-loop domains-like	X: Cas7-related	H: CRISPR-associated protein Cas7f/Csy3	T: F_bP_aldolase	F:	ECOD (20:10:01)
F		e6esqF1	A: P-loop domains-like	X: Cas7-related	H: CRISPR-associated protein Cas7f/Csy3	T: Peptidase_M42	F:	ECOD (20:10:01)
E		e6esqE1	A: P-loop domains-like	X: Cas7-related	H: CRISPR-associated protein Cas7f/Csy3	T: F_bP_aldolase	F:	ECOD (20:10:01)
D		e6esqD1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Class I glutamine amidotransferase-like	T: Cation_ATPase_C,Cation_ATPase_N	F:	ECOD (20:10:01)
C		e6esqC1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Class I glutamine amidotransferase-like	T: Cation_ATPase_C,Cation_ATPase_N	F:	ECOD (20:10:01)
B		e6esqB1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Class I glutamine amidotransferase-like	T: Cation_ATPase_C,Cation_ATPase_N	F:	ECOD (20:10:01)
A		e6esqA1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Class I glutamine amidotransferase-like	T: Cation_ATPase_C,Cation_ATPase_N	F:	ECOD (20:10:01)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
I, J, K, L	HydroxyMethylGlutaryl-CoA synthase	acetyl-CoA C-acetyltransferase activity acetyltransferase activity acyltransferase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity acetyl-CoA C-acyltransferase activity C-acyltransferase activity catalytic activity C-acetyltransferase activity hydroxymethylglutaryl-CoA synthase activity acyltransferase activity, acyl groups converted into alkyl on transfer	isopentenyl diphosphate biosynthetic process lipid biosynthetic process acetyl-CoA metabolic process phospholipid metabolic process nucleobase-containing compound metabolic process acyl-CoA metabolic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process sulfur compound metabolic process small molecule metabolic process phosphorus metabolic process nucleoside phosphate metabolic process isoprenoid biosynthetic process primary metabolic process isopentenyl diphosphate biosynthetic process lipid biosynthetic process acetyl-CoA metabolic process phospholipid metabolic process nucleobase-containing compound metabolic process acyl-CoA metabolic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process sulfur compound metabolic process small molecule metabolic process phosphorus metabolic process nucleoside phosphate metabolic process isoprenoid biosynthetic process primary metabolic process phospholipid biosynthetic process purine-containing compound metabolic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process metabolic process cellular process isopentenyl diphosphate biosynthetic process, mevalonate pathway lipid metabolic process isoprenoid metabolic process isopentenyl diphosphate metabolic process terpenoid biosynthetic process farnesyl diphosphate metabolic process farnesyl diphosphate biosynthetic process isoprenoid biosynthetic process via mevalonate farnesyl diphosphate biosynthetic process, mevalonate pathway terpenoid metabolic process	-
E, F, G, H	Pfam DUF35	cation binding ion binding binding metal ion binding small molecule binding	-	-
A, B, C, D	acetoacetyl-CoA thiolase	acetyl-CoA C-acetyltransferase activity acetyltransferase activity acyltransferase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity acetyl-CoA C-acyltransferase activity C-acyltransferase activity catalytic activity C-acetyltransferase activity	biosynthetic process isoprenoid biosynthetic process lipid biosynthetic process primary metabolic process metabolic process cellular process lipid metabolic process isoprenoid metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
I, J, K, L	IPR016039	Thiolase-like	Homologous Superfamily
I, J, K, L	IPR013528	Hydroxymethylglutaryl-coenzyme A synthase, N-terminal	Domain
I, J, K, L	IPR013747	Beta-ketoacyl-[acyl-carrier-protein] synthase III, C-terminal	Domain
I, J, K, L	IPR004656	Hydroxymethylglutaryl-CoA synthase	Family
E, F, G, H	IPR052513	Thioester Dehydratase-Related Protein	Family
E, F, G, H	IPR002878	ChsH2, C-terminal OB-fold domain	Domain
E, F, G, H	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
E, F, G, H	IPR022002	ChsH2, rubredoxin-like zinc ribbon domain	Domain
A, B, C, D	IPR016039	Thiolase-like	Homologous Superfamily
A, B, C, D	IPR055140	Thiolase, C-terminal domain 2	Domain
A, B, C, D	IPR020616	Thiolase, N-terminal	Domain
A, B, C, D	IPR002155	Thiolase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.