6F9B | pdb_00006f9b

Asymmetric unit of Rift Valley fever virus glycoprotein shell

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
X [auth Y]	UQ_con	e6f9bY1	A: alpha bundles	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: UQ_con	ECOD (develop294)
V	UQ_con	e6f9bV1	A: alpha bundles	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: UQ_con	ECOD (develop294)
T	UQ_con	e6f9bT1	A: alpha bundles	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: UQ_con	ECOD (develop294)
R	UQ_con	e6f9bR1	A: alpha bundles	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: UQ_con	ECOD (develop294)
P	UQ_con	e6f9bP1	A: alpha bundles	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: UQ_con	ECOD (develop294)
N	UQ_con	e6f9bN1	A: alpha bundles	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: UQ_con	ECOD (develop294)
L	UQ_con	e6f9bL1	A: alpha bundles	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: UQ_con	ECOD (develop294)
J	UQ_con	e6f9bJ1	A: alpha bundles	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: UQ_con	ECOD (develop294)
H	UQ_con	e6f9bH1	A: alpha bundles	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: UQ_con	ECOD (develop294)
F	UQ_con	e6f9bF1	A: alpha bundles	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: UQ_con	ECOD (develop294)
D	UQ_con	e6f9bD1	A: alpha bundles	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: UQ_con	ECOD (develop294)
B	Chromo	e6f9bB1	A: alpha bundles	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: Chromo	ECOD (develop294)
W [auth X]	Spo16_C	e6f9bX1	A: alpha bundles	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Spo16_C	ECOD (develop294)
U	Spo16_C	e6f9bU1	A: alpha bundles	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Spo16_C	ECOD (develop294)
S	Spo16_C	e6f9bS1	A: alpha bundles	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Spo16_C	ECOD (develop294)
Q	Spo16_C	e6f9bQ1	A: alpha bundles	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Spo16_C	ECOD (develop294)
O	Spo16_C	e6f9bO1	A: alpha bundles	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Spo16_C	ECOD (develop294)
M	Spo16_C	e6f9bM1	A: alpha bundles	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Spo16_C	ECOD (develop294)
K	Spo16_C	e6f9bK1	A: alpha bundles	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Spo16_C	ECOD (develop294)
I	Spo16_C	e6f9bI1	A: alpha bundles	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Spo16_C	ECOD (develop294)
G	Spo16_C	e6f9bG1	A: alpha bundles	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Spo16_C	ECOD (develop294)
E	Spo16_C	e6f9bE1	A: alpha bundles	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Spo16_C	ECOD (develop294)
C	Spo16_C	e6f9bC1	A: alpha bundles	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Spo16_C	ECOD (develop294)
A	Spo16_C	e6f9bA1	A: alpha bundles	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Spo16_C	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, D, F, H, J, B, D, F, H, J, L, N, P, R, T, V, X [auth Y]	PF07245	Phlebovirus glycoprotein G2 fusion domain (Phlebovirus_G2)	Phlebovirus glycoprotein G2 fusion domain	-	Family
B, D, F, H, J, B, D, F, H, J, L, N, P, R, T, V, X [auth Y]	PF19019	Phlebovirus glycoprotein G2 C-terminal domain (Phlebo_G2_C)	Phlebovirus glycoprotein G2 C-terminal domain	This family consists of several Phlebovirus glycoprotein G2 C-terminal Ig-like domains.	Domain
A, C, E, G, I, A, C, E, G, I, K, M, O, Q, S, U, W [auth X]	PF07243	Phlebovirus glycoprotein G1 (Phlebovirus_G1)	Phlebovirus glycoprotein G1	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D, F, H, J, B, D, F, H, J, L, N, P, R, T, V, X [auth Y]	Glycoprotein	-	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated perturbation of host cellular process regulation of biological process symbiont-mediated suppression of host apoptosis regulation of cellular process symbiont-mediated perturbation of host programmed cell death viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated perturbation of host cellular process regulation of biological process symbiont-mediated suppression of host apoptosis regulation of cellular process symbiont-mediated perturbation of host programmed cell death biological regulation symbiont-mediated suppression of host programmed cell death regulation of killing of cells of another organism disruption of cell in another organism symbiont-mediated perturbation of host process cellular process regulation of cell killing symbiont-mediated perturbation of host apoptosis disruption of anatomical structure in another organism modulation of process of another organism killing of cells of another organism cell killing virion attachment to host cell receptor-mediated virion attachment to host cell adhesion of symbiont to host cell entry receptor-mediated virion attachment to host cell adhesion of symbiont to host	cellular anatomical structure membrane virion component virion membrane host cellular component host intracellular membrane-bounded organelle host intracellular part host cell membrane other organism part host cell mitochondrion host cell cytoplasm part host intracellular organelle host organelle outer membrane host cell cytoplasm cellular anatomical structure membrane virion component virion membrane host cellular component host intracellular membrane-bounded organelle host intracellular part host cell membrane other organism part host cell mitochondrion host cell cytoplasm part host intracellular organelle host organelle outer membrane host cell cytoplasm host cell part host cell mitochondrial envelope host intracellular region host cell mitochondrial outer membrane host cell mitochondrial membrane host outer membrane host cell endoplasmic reticulum host cell endomembrane system host cell endoplasmic reticulum membrane host cell Golgi membrane host cell Golgi apparatus
A, C, E, G, I, A, C, E, G, I, K, M, O, Q, S, U, W [auth X]	Glycoprotein	-	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated perturbation of host cellular process regulation of biological process symbiont-mediated suppression of host apoptosis regulation of cellular process symbiont-mediated perturbation of host programmed cell death viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated perturbation of host cellular process regulation of biological process symbiont-mediated suppression of host apoptosis regulation of cellular process symbiont-mediated perturbation of host programmed cell death biological regulation symbiont-mediated suppression of host programmed cell death regulation of killing of cells of another organism disruption of cell in another organism symbiont-mediated perturbation of host process cellular process regulation of cell killing symbiont-mediated perturbation of host apoptosis disruption of anatomical structure in another organism modulation of process of another organism killing of cells of another organism cell killing virion attachment to host cell receptor-mediated virion attachment to host cell adhesion of symbiont to host cell entry receptor-mediated virion attachment to host cell adhesion of symbiont to host	cellular anatomical structure membrane virion component virion membrane host cellular component host intracellular membrane-bounded organelle host intracellular part host cell membrane other organism part host cell mitochondrion host cell cytoplasm part host intracellular organelle host organelle outer membrane host cell cytoplasm cellular anatomical structure membrane virion component virion membrane host cellular component host intracellular membrane-bounded organelle host intracellular part host cell membrane other organism part host cell mitochondrion host cell cytoplasm part host intracellular organelle host organelle outer membrane host cell cytoplasm host cell part host cell mitochondrial envelope host intracellular region host cell mitochondrial outer membrane host cell mitochondrial membrane host outer membrane host cell endoplasmic reticulum host cell endomembrane system host cell endoplasmic reticulum membrane host cell Golgi membrane host cell Golgi apparatus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D, F, H, J, B, D, F, H, J, L, N, P, R, T, V, X [auth Y]	IPR009879	Phlebovirus nonstructural NS-M	Domain
B, D, F, H, J, B, D, F, H, J, L, N, P, R, T, V, X [auth Y]	IPR009878	Phlebovirus glycoprotein G2, fusion domain	Domain
B, D, F, H, J, B, D, F, H, J, L, N, P, R, T, V, X [auth Y]	IPR010826	Phlebovirus glycoprotein G1	Domain
B, D, F, H, J, B, D, F, H, J, L, N, P, R, T, V, X [auth Y]	IPR016404	M polyprotein precursor, phlebovirus	Family
B, D, F, H, J, B, D, F, H, J, L, N, P, R, T, V, X [auth Y]	IPR043603	Phlebovirus glycoprotein G2, C-terminal domain	Domain
A, C, E, G, I, A, C, E, G, I, K, M, O, Q, S, U, W [auth X]	IPR009879	Phlebovirus nonstructural NS-M	Domain
A, C, E, G, I, A, C, E, G, I, K, M, O, Q, S, U, W [auth X]	IPR009878	Phlebovirus glycoprotein G2, fusion domain	Domain
A, C, E, G, I, A, C, E, G, I, K, M, O, Q, S, U, W [auth X]	IPR010826	Phlebovirus glycoprotein G1	Domain
A, C, E, G, I, A, C, E, G, I, K, M, O, Q, S, U, W [auth X]	IPR016404	M polyprotein precursor, phlebovirus	Family
A, C, E, G, I, A, C, E, G, I, K, M, O, Q, S, U, W [auth X]	IPR043603	Phlebovirus glycoprotein G2, C-terminal domain	Domain