6FRK | pdb_00006frk

Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BB [auth v]SCOP2 FamilyRas-like monodomain GTPases 8097819 4004043 SCOP2 (2022-06-29)
BB [auth v]SCOP2 SuperfamilyRas-like P-loop GTPases 8097820 3002022 SCOP2 (2022-06-29)
FB [auth z]SCOP2B SuperfamilySignal recognition particle alu RNA binding heterodimer, SRP9/14 8077811 3000976 SCOP2B (2022-06-29)
AB [auth u]SCOP2B SuperfamilyTPR-like 8053750 3001345 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
D [auth 4]e6frk41 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
F [auth 6]e6frk61 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
I [auth A]e6frkA1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
J [auth B]e6frkB1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
M [auth E]e6frkE1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
N [auth F]e6frkF1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
P [auth H]e6frkH1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
R [auth J]e6frkJ1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
S [auth L]e6frkL1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
T [auth M]e6frkM1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
W [auth P]e6frkP1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
X [auth Q]e6frkQ1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
Y [auth R]e6frkR1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
Z [auth S]e6frkS1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
AA [auth T]e6frkT1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
BA [auth U]e6frkU1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
CA [auth V]e6frkV1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
DA [auth W]e6frkW1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
EA [auth X]e6frkX1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
FA [auth Y]e6frkY1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
GA [auth Z]e6frkZ1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
HA [auth a]e6frka1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
IA [auth b]e6frkb1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
JA [auth c]e6frkc1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
KA [auth d]e6frkd1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
LA [auth e]e6frke1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
MA [auth f]e6frkf1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
NA [auth g]e6frkg1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
PA [auth i]e6frki1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
QA [auth j]e6frkj1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
RA [auth k]e6frkk1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
TA [auth m]e6frkm1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
UA [auth n]e6frkn1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
VA [auth o]e6frko1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
XA [auth q]e6frkq1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
BB [auth v]e6frkv1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
CB [auth w]e6frkw1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
DB [auth x]e6frkx1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
EB [auth y]e6frky1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
FB [auth z]e6frkz1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
AB [auth u]e6frku1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
WA [auth p]e6frkp1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
SA [auth l]e6frkl1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
OA [auth h]e6frkh1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
C [auth 3]e6frk31 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
V [auth O]e6frkO1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
U [auth N]e6frkN1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
Q [auth I]e6frkI1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
O [auth G]e6frkG1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
L [auth D]e6frkD1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
K [auth C]e6frkC1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Class I glutamine amidotransferase-likeT: Ephrin_lbdF:ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
X [auth Q]PF01922SRP19 protein (SRP19)SRP19 protein- Family
Y [auth R]PF17004Putative TPR-like repeat (SRP_TPR_like)Putative TPR-like repeat- Repeat
BA [auth U]PF16969RNA-binding signal recognition particle 68 (SRP68)RNA-binding signal recognition particle 68- Family
DA [auth W]PF05486Signal recognition particle 9 kDa protein (SRP9) (SRP9-21)Signal recognition particle 9 kDa protein (SRP9)This family consists of several eukaryotic SRP9 proteins. SRP9 together with the Alu-homologous region of 7SL RNA and SRP14 comprise the "Alu domain" of SRP, which mediates pausing of synthesis of ribosome associated nascent polypeptides that have be ...This family consists of several eukaryotic SRP9 proteins. SRP9 together with the Alu-homologous region of 7SL RNA and SRP14 comprise the "Alu domain" of SRP, which mediates pausing of synthesis of ribosome associated nascent polypeptides that have been engaged by the targeting domain of SRP [1]. This family also contains the homologous fungal SRP21 [2].
Domain
EA [auth X]PF00448SRP54-type protein, GTPase domain (SRP54)SRP54-type protein, GTPase domainThis family includes relatives of the G-domain of the SRP54 family of proteins. Domain
FA [auth Y]PF04086Signal recognition particle, alpha subunit, N-terminal (SRP-alpha_N)Signal recognition particle, alpha subunit, N-terminal- Family
GA [auth Z]PF02290Signal recognition particle 14kD protein (SRP14)Signal recognition particle 14kD proteinThe signal recognition particle (SRP) is a multimeric protein involved in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP14 and SRP9 form a complex essential for SRP RNA binding. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 1]Canis lupus familiaris RNA, 7SL, cytoplasmic 1 (RN7SL1), SRP RNA---
B [auth 2]tRNA---
D [auth 4]Ribosomal protein L12---
E [auth 5]28S ribosomal RNA---
F [auth 6]60S acidic ribosomal protein P0---
G [auth 7]5S ribosomal RNA---
H [auth 8]5.8S ribosomal RNA---
I [auth A]Ribosomal protein L8---
J [auth B]Ribosomal protein uL3---
M [auth E]Ribosomal protein eL6---
N [auth F]Ribosomal protein uL30---
P [auth H]Ribosomal protein uL6---
R [auth J]Ribosomal protein uL5---
S [auth L]Ribosomal protein eL13---
T [auth M]Ribosomal protein eL14---
W [auth P]Ribosomal protein uL22---
X [auth Q]Ribosomal protein eL18---
Y [auth R]Ribosomal protein eL19---
Z [auth S]Ribosomal protein eL20---
AA [auth T]Ribosomal protein eL21---
BA [auth U]Ribosomal protein eL22---
CA [auth V]Ribosomal protein L23---
DA [auth W]Ribosomal protein eL24---
EA [auth X]Ribosomal protein uL23---
FA [auth Y]Ribosomal protein uL24---
GA [auth Z]60S ribosomal protein L27---
HA [auth a]Ribosomal protein uL15---
IA [auth b]60S ribosomal protein L29---
JA [auth c]Ribosomal protein eL30---
KA [auth d]Ribosomal protein eL31---
LA [auth e]Ribosomal protein eL32---
MA [auth f]Ribosomal protein eL33---
NA [auth g]Ribosomal protein eL34---
PA [auth i]Ribosomal protein eL36---
QA [auth j]Ribosomal protein L37---
RA [auth k]Ribosomal protein eL38---
TA [auth m]Ribosomal protein eL40---
UA [auth n]Ribosomal protein eL41---
VA [auth o]Ribosomal protein eL42---
XA [auth q]Signal recognition particle subunit SRP19
YA [auth r]Signal recognition particle subunit SRP72,Signal recognition particle subunit SRP72,Signal recognition particle subunit SRP72
ZA [auth t]Signal sequence---
BB [auth v]SRP receptor beta subunit
CB [auth w]Signal recognition particle 9 kDa protein
DB [auth x]Signal recognition particle 54 kDa protein
EB [auth y]SRP receptor alpha subunit
FB [auth z]Signal recognition particle 14 kDa protein
AB [auth u]Signal recognition particle subunit SRP68
WA [auth p]Ribosomal protein eL43---
SA [auth l]Ribosomal protein eL39---
OA [auth h]Ribosomal protein uL29---
C [auth 3]Ribosomal protein eL28---
V [auth O]Ribosomal protein uL13---
U [auth N]Ribosomal protein L15---
Q [auth I]Ribosomal protein uL16---
O [auth G]Ribosomal protein eL8---
L [auth D]Ribosomal protein uL18---
K [auth C]Ribosomal protein uL4---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
XA [auth q]IPR002778Signal recognition particle, SRP19 subunitFamily
XA [auth q]IPR036521Signal recognition particle, subunit SRP19-like superfamilyHomologous Superfamily
YA [auth r]IPR013699Signal recognition particle, SRP72 subunit, RNA-bindingDomain
YA [auth r]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
YA [auth r]IPR031545Signal recognition particle subunit SRP72, TPR-like repeatRepeat
YA [auth r]IPR026270Signal recognition particle, SRP72 subunitFamily
YA [auth r]IPR019734Tetratricopeptide repeatRepeat
BB [auth v]IPR024156Small GTPase superfamily, ARF typeFamily
BB [auth v]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
BB [auth v]IPR019009Signal recognition particle receptor, beta subunitFamily
CB [auth w]IPR008832Signal recognition particle SRP9Family
CB [auth w]IPR009018Signal recognition particle, SRP9/SRP14 subunitHomologous Superfamily
CB [auth w]IPR039432SRP9 domainDomain
CB [auth w]IPR039914Signal recognition particle SRP9-likeFamily
DB [auth x]IPR000897Signal recognition particle, SRP54 subunit, GTPase domainDomain
DB [auth x]IPR004125Signal recognition particle, SRP54 subunit, M-domainDomain
DB [auth x]IPR003593AAA+ ATPase domainDomain
DB [auth x]IPR013822Signal recognition particle SRP54, helical bundleDomain
DB [auth x]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
DB [auth x]IPR022941Signal recognition particle, SRP54 subunitFamily
DB [auth x]IPR036225SRP/SRP receptor, N-terminalHomologous Superfamily
DB [auth x]IPR042101Signal recognition particle SRP54, N-terminal domain superfamilyHomologous Superfamily
DB [auth x]IPR006325Signal recognition particle, SRP54 subunit, eukaryoticFamily
DB [auth x]IPR036891Signal recognition particle, SRP54 subunit, M-domain superfamilyHomologous Superfamily
EB [auth y]IPR000897Signal recognition particle, SRP54 subunit, GTPase domainDomain
EB [auth y]IPR036225SRP/SRP receptor, N-terminalHomologous Superfamily
EB [auth y]IPR011012Longin-like domain superfamilyHomologous Superfamily
EB [auth y]IPR042101Signal recognition particle SRP54, N-terminal domain superfamilyHomologous Superfamily
EB [auth y]IPR003593AAA+ ATPase domainDomain
EB [auth y]IPR007222Signal recognition particle receptor, alpha subunit, N-terminalDomain
EB [auth y]IPR013822Signal recognition particle SRP54, helical bundleDomain
EB [auth y]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
FB [auth z]IPR003210Signal recognition particle, SRP14 subunitFamily
FB [auth z]IPR009018Signal recognition particle, SRP9/SRP14 subunitHomologous Superfamily
AB [auth u]IPR026258Signal recognition particle subunit SRP68Family
AB [auth u]IPR038253SRP68, N-terminal domain superfamilyHomologous Superfamily
AB [auth u]IPR034652Signal recognition particle subunit SRP68, RNA-binding domainDomain