6H7W
Model of retromer-Vps5 complex assembled on membrane.
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B [auth C] | SCOP2 Family | Vps26-like | 8067160 | 4004065 | SCOP2 (2022-06-29) |
B [auth C] | SCOP2 Superfamily | Arrestin/Vps26-like | 8067161 | 3002071 | SCOP2 (2022-06-29) |
B [auth C] | SCOP2 Superfamily | Arrestin/Vps26-like | 8102529 | 3002071 | SCOP2 (2022-06-29) |
E [auth D] | SCOP2 Family | PX domain | 8084580 | 4003533 | SCOP2 (2022-06-29) |
E [auth D] | SCOP2 Superfamily | PX domain | 8084581 | 3001006 | SCOP2 (2022-06-29) |
K [auth M] | SCOP2 Family | Vps5 C-terminal domain-like | 8084771 | 4004079 | SCOP2 (2022-06-29) |
K [auth M] | SCOP2 Superfamily | BAR/IMD domain-like | 8084772 | 3000528 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth J] | Vps26_C | e6h7wJ1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Vps26_C | ECOD (1.6) |
A [auth J] | Vps26_N | e6h7wJ2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Vps26_N | ECOD (1.6) |
B [auth C] | Vps26_C | e6h7wC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Vps26_C | ECOD (1.6) |
B [auth C] | Vps26_N | e6h7wC2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Vps26_N | ECOD (1.6) |
C [auth B] | Vps5 | e6h7wB1 | A: alpha duplicates or obligate multimers | X: BAR/IMD domain-like | H: BAR/IMD domain-like (From Topology) | T: BAR/IMD domain-like | F: Vps5 | ECOD (1.6) |
C [auth B] | PX | e6h7wB2 | A: a+b two layers | X: PX domain (From Topology) | H: PX domain (From Topology) | T: PX domain | F: PX | ECOD (1.6) |
D [auth A] | Vps5 | e6h7wA1 | A: alpha duplicates or obligate multimers | X: BAR/IMD domain-like | H: BAR/IMD domain-like (From Topology) | T: BAR/IMD domain-like | F: Vps5 | ECOD (1.6) |
D [auth A] | PX | e6h7wA2 | A: a+b two layers | X: PX domain (From Topology) | H: PX domain (From Topology) | T: PX domain | F: PX | ECOD (1.6) |
F [auth G] | Vps5 | e6h7wG2 | A: alpha duplicates or obligate multimers | X: BAR/IMD domain-like | H: BAR/IMD domain-like (From Topology) | T: BAR/IMD domain-like | F: Vps5 | ECOD (1.6) |
F [auth G] | PX | e6h7wG1 | A: a+b two layers | X: PX domain (From Topology) | H: PX domain (From Topology) | T: PX domain | F: PX | ECOD (1.6) |
G [auth E] | Vps5 | e6h7wE1 | A: alpha duplicates or obligate multimers | X: BAR/IMD domain-like | H: BAR/IMD domain-like (From Topology) | T: BAR/IMD domain-like | F: Vps5 | ECOD (1.6) |
G [auth E] | PX | e6h7wE2 | A: a+b two layers | X: PX domain (From Topology) | H: PX domain (From Topology) | T: PX domain | F: PX | ECOD (1.6) |
J [auth P] | Vps5 | e6h7wP1 | A: alpha duplicates or obligate multimers | X: BAR/IMD domain-like | H: BAR/IMD domain-like (From Topology) | T: BAR/IMD domain-like | F: Vps5 | ECOD (1.6) |
J [auth P] | PX | e6h7wP2 | A: a+b two layers | X: PX domain (From Topology) | H: PX domain (From Topology) | T: PX domain | F: PX | ECOD (1.6) |
L [auth N] | Vps5 | e6h7wN1 | A: alpha duplicates or obligate multimers | X: BAR/IMD domain-like | H: BAR/IMD domain-like (From Topology) | T: BAR/IMD domain-like | F: Vps5 | ECOD (1.6) |
L [auth N] | PX | e6h7wN2 | A: a+b two layers | X: PX domain (From Topology) | H: PX domain (From Topology) | T: PX domain | F: PX | ECOD (1.6) |
M [auth H] | Vps5 | e6h7wH2 | A: alpha duplicates or obligate multimers | X: BAR/IMD domain-like | H: BAR/IMD domain-like (From Topology) | T: BAR/IMD domain-like | F: Vps5 | ECOD (1.6) |
M [auth H] | PX | e6h7wH1 | A: a+b two layers | X: PX domain (From Topology) | H: PX domain (From Topology) | T: PX domain | F: PX | ECOD (1.6) |
N [auth F] | Vps5 | e6h7wF2 | A: alpha duplicates or obligate multimers | X: BAR/IMD domain-like | H: BAR/IMD domain-like (From Topology) | T: BAR/IMD domain-like | F: Vps5 | ECOD (1.6) |
N [auth F] | PX | e6h7wF1 | A: a+b two layers | X: PX domain (From Topology) | H: PX domain (From Topology) | T: PX domain | F: PX | ECOD (1.6) |
E [auth D] | PX | e6h7wD1 | A: a+b two layers | X: PX domain (From Topology) | H: PX domain (From Topology) | T: PX domain | F: PX | ECOD (1.6) |
H [auth K] | PX | e6h7wK1 | A: a+b two layers | X: PX domain (From Topology) | H: PX domain (From Topology) | T: PX domain | F: PX | ECOD (1.6) |
O [auth V] | PX | e6h7wV1 | A: a+b two layers | X: PX domain (From Topology) | H: PX domain (From Topology) | T: PX domain | F: PX | ECOD (1.6) |
P [auth L] | PX | e6h7wL1 | A: a+b two layers | X: PX domain (From Topology) | H: PX domain (From Topology) | T: PX domain | F: PX | ECOD (1.6) |
I [auth O] | Vps5 | e6h7wO1 | A: alpha duplicates or obligate multimers | X: BAR/IMD domain-like | H: BAR/IMD domain-like (From Topology) | T: BAR/IMD domain-like | F: Vps5 | ECOD (1.6) |
K [auth M] | Vps5 | e6h7wM1 | A: alpha duplicates or obligate multimers | X: BAR/IMD domain-like | H: BAR/IMD domain-like (From Topology) | T: BAR/IMD domain-like | F: Vps5 | ECOD (1.6) |
Q [auth S] | Metallophos_2 | e6h7wS1 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: Metallo-dependent phosphatases (From Topology) | T: Metallo-dependent phosphatases | F: Metallophos_2 | ECOD (1.6) |
S [auth T] | Metallophos_2 | e6h7wT1 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: Metallo-dependent phosphatases (From Topology) | T: Metallo-dependent phosphatases | F: Metallophos_2 | ECOD (1.6) |
R [auth Q] | Vps35 | e6h7wQ2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Vps35 | ECOD (1.6) |
T [auth R] | Vps35 | e6h7wR2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Vps35 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth J], B [auth C] | PF03643 | Vacuolar protein sorting-associated protein 26 (Vps26) | Vacuolar protein sorting-associated protein 26 | - | Family |
PF00787 | PX domain (PX) | PX domain | PX domains bind to phosphoinositides. | Domain | |
E [auth D], H [auth K], O [auth V], P [auth L] | PF00787 | PX domain (PX) | PX domain | PX domains bind to phosphoinositides. | Domain |
I [auth O], K [auth M] | PF09325 | Vps5 C terminal like (Vps5) | Vps5 C terminal like | Vps5 is a sorting nexin that functions in membrane trafficking. This is the C terminal dimerisation domain [1]. | Domain |
Q [auth S], S [auth T] | PF12850 | Calcineurin-like phosphoesterase superfamily domain (Metallophos_2) | Calcineurin-like phosphoesterase superfamily domain | Members of this family are part of the Calcineurin-like phosphoesterase superfamily. | Domain |
R [auth Q], T [auth R] | PF03635 | Vacuolar protein sorting-associated protein 35 (Vps35) | Vacuolar protein sorting-associated protein 35 | - | Repeat |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | MONOTOPIC MEMBRANE PROTEINS | Membrane-Shaping Proteins (monotopic) | Retromer Vps26-Vps29-Vps35 complex |