6HD0
Common mode of remodeling AAA ATPases p97/CDC48 by their disassembly cofactors ASPL/PUX1
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | PF02359 | e6hd0B2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF02359 | ECOD (1.6) |
A [auth B] | PF17862 | e6hd0B1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17862 | ECOD (1.6) |
A [auth B] | PF02933 | e6hd0B3 | A: a+b two layers | X: Cdc48 domain 2-like (From Topology) | H: Cdc48 domain 2-like (From Topology) | T: Cdc48 domain 2-like | F: PF02933 | ECOD (1.6) |
A [auth B] | PF00004 | e6hd0B4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
C [auth T] | PF02359 | e6hd0T3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF02359 | ECOD (1.6) |
C [auth T] | PF17862 | e6hd0T4 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17862 | ECOD (1.6) |
C [auth T] | PF02933 | e6hd0T1 | A: a+b two layers | X: Cdc48 domain 2-like (From Topology) | H: Cdc48 domain 2-like (From Topology) | T: Cdc48 domain 2-like | F: PF02933 | ECOD (1.6) |
C [auth T] | PF00004 | e6hd0T2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
D [auth U] | PF02359 | e6hd0U2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF02359 | ECOD (1.6) |
D [auth U] | PF17862 | e6hd0U4 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17862 | ECOD (1.6) |
D [auth U] | PF02933 | e6hd0U3 | A: a+b two layers | X: Cdc48 domain 2-like (From Topology) | H: Cdc48 domain 2-like (From Topology) | T: Cdc48 domain 2-like | F: PF02933 | ECOD (1.6) |
D [auth U] | PF00004 | e6hd0U1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
E [auth V] | PF02359 | e6hd0V1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF02359 | ECOD (1.6) |
E [auth V] | PF17862 | e6hd0V3 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17862 | ECOD (1.6) |
E [auth V] | PF02933 | e6hd0V2 | A: a+b two layers | X: Cdc48 domain 2-like (From Topology) | H: Cdc48 domain 2-like (From Topology) | T: Cdc48 domain 2-like | F: PF02933 | ECOD (1.6) |
E [auth V] | PF00004 | e6hd0V4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
G [auth C] | PF02359 | e6hd0C3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF02359 | ECOD (1.6) |
G [auth C] | PF17862 | e6hd0C2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17862 | ECOD (1.6) |
G [auth C] | PF02933 | e6hd0C4 | A: a+b two layers | X: Cdc48 domain 2-like (From Topology) | H: Cdc48 domain 2-like (From Topology) | T: Cdc48 domain 2-like | F: PF02933 | ECOD (1.6) |
G [auth C] | PF00004 | e6hd0C1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
F [auth A] | PF02359 | e6hd0A1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF02359 | ECOD (1.6) |
F [auth A] | PF17862 | e6hd0A3 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17862 | ECOD (1.6) |
F [auth A] | PF02933 | e6hd0A4 | A: a+b two layers | X: Cdc48 domain 2-like (From Topology) | H: Cdc48 domain 2-like (From Topology) | T: Cdc48 domain 2-like | F: PF02933 | ECOD (1.6) |
F [auth A] | PF00004 | e6hd0A2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
B [auth G] | PF00789 | e6hd0G1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF00789 | ECOD (1.6) |
H [auth D] | PF00789 | e6hd0D1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF00789 | ECOD (1.6) |
I [auth E] | PF00789 | e6hd0E1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF00789 | ECOD (1.6) |
J [auth F] | PF00789 | e6hd0F1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF00789 | ECOD (1.6) |
K | PF00789 | e6hd0K1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF00789 | ECOD (1.6) |
L [auth I] | PF00789 | e6hd0I1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF00789 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02933 | Cell division protein 48 (CDC48), domain 2 (CDC48_2) | Cell division protein 48 (CDC48), domain 2 | This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ... | Domain | |
PF17862 | AAA+ lid domain (AAA_lid_3) | AAA+ lid domain | This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. | Domain | |
PF02359 | Cell division protein 48 (CDC48), N-terminal domain (CDC48_N) | Cell division protein 48 (CDC48), N-terminal domain | This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ... | Domain | |
PF00004 | ATPase family associated with various cellular activities (AAA) (AAA) | ATPase family associated with various cellular activities (AAA) | AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. | Domain | |
PF00789 | UBX domain (UBX) | UBX domain | This domain is present in ubiquitin-regulatory proteins and is a general Cdc48-interacting module [2]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR003959 | ATPase, AAA-type, core | Domain | |
IPR005938 | AAA ATPase, CDC48 family | Family | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR029067 | CDC48 domain 2-like superfamily | Homologous Superfamily | |
IPR003338 | CDC48, N-terminal subdomain | Domain | |
IPR004201 | CDC48, domain 2 | Domain | |
IPR009010 | Aspartate decarboxylase-like domain superfamily | Homologous Superfamily | |
IPR003593 | AAA+ ATPase domain | Domain | |
IPR041569 | AAA ATPase, AAA+ lid domain | Domain | |
IPR003960 | ATPase, AAA-type, conserved site | Conserved Site | |
IPR044232 | Plant UBX domain-containing protein 1 | Family | |
IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily | |
IPR001012 | UBX domain | Domain |