6HD3
Common mode of remodeling AAA ATPases p97/CDC48 by their disassembly cofactors ASPL/PUX1
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth C] | d6hd3c1 | All beta proteins | Double psi beta-barrel | ADC-like | automated matches | automated matches | Mouse-ear cress (Arabidopsis thaliana ) [TaxId: 3702 ], | SCOPe (2.08) |
B [auth C] | d6hd3c3 | Alpha and beta proteins (a/b) | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | Extended AAA-ATPase domain | automated matches | Mouse-ear cress (Arabidopsis thaliana ) [TaxId: 3702 ], | SCOPe (2.08) |
B [auth C] | d6hd3c2 | Alpha and beta proteins (a+b) | Cdc48 domain 2-like | Cdc48 domain 2-like | automated matches | automated matches | Mouse-ear cress (Arabidopsis thaliana ) [TaxId: 3702 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF02359 | e6hd3A2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF02359 | ECOD (1.6) |
A | PF17862 | e6hd3A3 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17862 | ECOD (1.6) |
A | PF02933 | e6hd3A4 | A: a+b two layers | X: Cdc48 domain 2-like (From Topology) | H: Cdc48 domain 2-like (From Topology) | T: Cdc48 domain 2-like | F: PF02933 | ECOD (1.6) |
A | PF00004 | e6hd3A1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
B [auth C] | PF02359 | e6hd3C2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF02359 | ECOD (1.6) |
B [auth C] | PF17862 | e6hd3C1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17862 | ECOD (1.6) |
B [auth C] | PF02933 | e6hd3C3 | A: a+b two layers | X: Cdc48 domain 2-like (From Topology) | H: Cdc48 domain 2-like (From Topology) | T: Cdc48 domain 2-like | F: PF02933 | ECOD (1.6) |
B [auth C] | PF00004 | e6hd3C4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B [auth C] | 2.40.40.20 | Mainly Beta | Beta Barrel | Barwin-like endoglucanases | CATH (utative) | |
B [auth C] | 3.10.330.10 | Alpha Beta | Roll | Vcp-like ATPase | Chain A, domain 2 | CATH (utative) |
B [auth C] | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (utative) |
B [auth C] | 1.10.8.60 | Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein | domain 3 | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B [auth C] | PF02933 | Cell division protein 48 (CDC48), domain 2 (CDC48_2) | Cell division protein 48 (CDC48), domain 2 | This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ... | Domain |
A, B [auth C] | PF17862 | AAA+ lid domain (AAA_lid_3) | AAA+ lid domain | This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. | Domain |
A, B [auth C] | PF02359 | Cell division protein 48 (CDC48), N-terminal domain (CDC48_N) | Cell division protein 48 (CDC48), N-terminal domain | This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ... | Domain |
A, B [auth C] | PF00004 | ATPase family associated with various cellular activities (AAA) (AAA) | ATPase family associated with various cellular activities (AAA) | AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, B [auth C] | IPR004201 | CDC48, domain 2 | Domain |
A, B [auth C] | IPR009010 | Aspartate decarboxylase-like domain superfamily | Homologous Superfamily |
A, B [auth C] | IPR003593 | AAA+ ATPase domain | Domain |
A, B [auth C] | IPR003959 | ATPase, AAA-type, core | Domain |
A, B [auth C] | IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |
A, B [auth C] | IPR029067 | CDC48 domain 2-like superfamily | Homologous Superfamily |
A, B [auth C] | IPR041569 | AAA ATPase, AAA+ lid domain | Domain |
A, B [auth C] | IPR005938 | AAA ATPase, CDC48 family | Family |
A, B [auth C] | IPR003960 | ATPase, AAA-type, conserved site | Conserved Site |
A, B [auth C] | IPR003338 | CDC48, N-terminal subdomain | Domain |