6HER
Mouse prion protein in complex with Nanobody 484
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6hera_ | Alpha and beta proteins (a+b) | Prion-like | Prion-like | Prion-like | automated matches | Mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
B | d6herb1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | (Camelus dromedarius ) [TaxId: 9838 ], | SCOPe (2.08) |
B | d6herb2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Camelus dromedarius ) [TaxId: 9838 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Prion | e6herA1 | A: a+b two layers | X: Prion-like (From Topology) | H: Prion-like (From Topology) | T: Prion-like | F: Prion | ECOD (1.6) |
B | V-set_12 | e6herB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
Heavy Chain | IGHV1 | - | major prion protein | SAbDab (2024-10-11) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00377 | Prion/Doppel alpha-helical domain (Prion) | Prion/Doppel alpha-helical domain | The prion protein is thought to be the infectious agent that causes transmissible spongiform encephalopathies, such as scrapie and BSE. It is thought that the prion protein can exist in two different forms: one is the normal cellular protein, and the ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR022416 | Prion/Doppel protein, beta-ribbon domain | Domain | |
IPR025860 | Major prion protein N-terminal domain | Domain | |
IPR036924 | Prion/Doppel beta-ribbon domain superfamily | Homologous Superfamily | |
IPR000817 | Prion protein | Family |