6IDF | pdb_00006idf

Cryo-EM structure of gamma secretase in complex with a Notch fragment

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Cytochrom_B562	e6idfD1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Cytochrom_B562	ECOD (v294.1)
C	Cytochrom_B562	e6idfC1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Cytochrom_B562	ECOD (v294.1)
B	Cytochrom_B562	e6idfB1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Cytochrom_B562	ECOD (v294.1)
A	Cytochrom_B562	e6idfA2	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Cytochrom_B562	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
D	PF10251	Presenilin enhancer-2 subunit of gamma secretase (PEN-2)	Presenilin enhancer-2 subunit of gamma secretase	-	Family
C	PF06105	Aph-1 protein (Aph-1)	Aph-1 protein	-	Family
B	PF01080	Presenilin (Presenilin)	Presenilin	-	Family
A	PF18266	Nicastrin small lobe (Ncstrn_small)	Nicastrin small lobe	This domain is part of the protein Nicastrin, a component of gamma secretase present in Homo sapiens. Gamma-secretase is thought to contribute to Alzheimer's disease development by generating beta-amyloid peptides. This domain is the known as the sma ...	This domain is part of the protein Nicastrin, a component of gamma secretase present in Homo sapiens. Gamma-secretase is thought to contribute to Alzheimer's disease development by generating beta-amyloid peptides. This domain is the known as the small lobe which forms the 'lid'. The lid is an extended surface loop that covers the hydrophilic pocket that is thought to be responsible for substrate recruitment. On substrate binding, the large lobe is thought to rotate relative to the small lobe [1].	Domain
A	PF05450	Nicastrin large lobe (Nicastrin)	Nicastrin large lobe	Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fi ...	Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [1]. A region featured in this family has a fold similar to human transferrin receptor (TfR, Swiss:P02786) and a bacterial aminopeptidase (Swiss:P80561). It is implicated in the pathogenesis of Alzheimer's disease [4].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E	Notch1	molecular transducer activity transmembrane signaling receptor activity signaling receptor activity DNA binding binding chromatin binding nucleic acid binding chromatin DNA binding protein binding signaling receptor binding Notch binding identical protein binding molecular function activator activity molecular function regulator activity molecular transducer activity transmembrane signaling receptor activity signaling receptor activity DNA binding binding chromatin binding nucleic acid binding chromatin DNA binding protein binding signaling receptor binding Notch binding identical protein binding molecular function activator activity molecular function regulator activity transcription regulator activator activity enzyme regulator activity molecular function inhibitor activity enzyme inhibitor activity transcription coactivator activity transcription regulator activity transcription coregulator activity cation binding ion binding calcium ion binding metal ion binding small molecule binding enzyme binding	developmental process heart development multicellular organismal process cardiac chamber morphogenesis animal organ development heart morphogenesis ventricular septum development circulatory system development multicellular organism development anatomical structure morphogenesis cardiac septum development cardiac septum morphogenesis ventricular septum morphogenesis cardiac chamber development anatomical structure development developmental process heart development multicellular organismal process cardiac chamber morphogenesis animal organ development heart morphogenesis ventricular septum development circulatory system development multicellular organism development anatomical structure morphogenesis cardiac septum development cardiac septum morphogenesis ventricular septum morphogenesis cardiac chamber development anatomical structure development animal organ morphogenesis cardiac ventricle development system development regulation of biological process regulation of cellular process regulation of cell adhesion biological regulation negative regulation of biological process negative regulation of cell adhesion cell adhesion cell-cell adhesion negative regulation of cell-cell adhesion mediated by cadherin cell-cell adhesion mediated by cadherin negative regulation of cell-cell adhesion negative regulation of cellular process regulation of cell-cell adhesion cellular process regulation of cell-cell adhesion mediated by cadherin cellular developmental process regulation of developmental process cell development regulation of neurogenesis regulation of cell differentiation regulation of gliogenesis negative regulation of glial cell proliferation regulation of cell development regulation of nervous system development neurogenesis negative regulation of neurogenesis regulation of glial cell proliferation gliogenesis cell differentiation regulation of multicellular organismal process negative regulation of nervous system development negative regulation of cell differentiation regulation of multicellular organismal development negative regulation of cell population proliferation cell population proliferation negative regulation of developmental process nervous system development negative regulation of gliogenesis negative regulation of cell development regulation of cell population proliferation glial cell proliferation negative regulation of multicellular organismal process negative regulation of stem cell differentiation stem cell differentiation regulation of stem cell differentiation epithelium development neuroendocrine cell differentiation tissue development epithelial cell differentiation generation of neurons neuron differentiation neuroepithelial cell differentiation columnar/cuboidal epithelial cell differentiation digestive system development foregut morphogenesis tube development digestive tract development tube morphogenesis digestive tract morphogenesis mesenchyme development mesenchymal cell development mesenchymal cell differentiation regulation of localization regulated exocytosis transport regulation of calcium ion-dependent exocytosis negative regulation of transport negative regulation of regulated secretory pathway vesicle-mediated transport regulation of regulated secretory pathway localization secretion by cell regulation of secretion by cell negative regulation of secretion negative regulation of exocytosis negative regulation of secretion by cell calcium-ion regulated exocytosis secretion regulation of transport negative regulation of calcium ion-dependent exocytosis export from cell regulation of vesicle-mediated transport establishment of localization regulation of secretion exocytosis regulation of exocytosis cell adhesion involved in heart morphogenesis regulation of cell adhesion involved in heart morphogenesis RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process cellular response to stimulus response to stimulus cellular response to gonadotropin stimulus response to endogenous stimulus response to gonadotropin cellular response to endogenous stimulus cellular response to chemical stimulus response to hormone cellular response to follicle-stimulating hormone stimulus response to chemical response to follicle-stimulating hormone cellular response to hormone stimulus negative regulation of cardiac muscle cell apoptotic process muscle cell apoptotic process negative regulation of programmed cell death regulation of apoptotic process regulation of cardiac muscle cell apoptotic process regulation of muscle cell apoptotic process regulation of programmed cell death cell death cardiac muscle cell apoptotic process negative regulation of apoptotic process regulation of striated muscle cell apoptotic process striated muscle cell apoptotic process negative regulation of muscle cell apoptotic process negative regulation of striated muscle cell apoptotic process apoptotic process programmed cell death heart growth developmental growth growth organ growth developmental growth involved in morphogenesis growth involved in heart morphogenesis smooth muscle cell differentiation positive regulation of smooth muscle cell differentiation regulation of smooth muscle cell differentiation positive regulation of biological process muscle cell differentiation positive regulation of muscle cell differentiation muscle structure development positive regulation of developmental process regulation of muscle cell differentiation positive regulation of cell differentiation positive regulation of cellular process cell surface receptor signaling pathway signaling cell communication Notch signaling pathway signal transduction endothelial cell differentiation endothelium development vasculature development blood vessel endothelial cell differentiation arterial endothelial cell differentiation blood vessel development endocardial cushion morphogenesis endocardial cushion development cardiac epithelial to mesenchymal transition epithelial to mesenchymal transition involved in endocardial cushion formation mesenchyme morphogenesis epithelial to mesenchymal transition endocardial cushion formation tissue morphogenesis anatomical structure formation involved in morphogenesis embryo development regulation of epithelial cell differentiation regulation of anatomical structure morphogenesis regulation of embryonic development regulation of development, heterochronic negative regulation of epithelial cell differentiation inhibition of neuroepithelial cell differentiation regulation of timing of cell differentiation neuronal stem cell population maintenance maintenance of cell number stem cell population maintenance negative regulation of RNA biosynthetic process negative regulation of nucleobase-containing compound metabolic process negative regulation of macromolecule metabolic process negative regulation of DNA-templated transcription negative regulation of metabolic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of RNA metabolic process regulation of glial cell differentiation negative regulation of oligodendrocyte differentiation negative regulation of glial cell differentiation central nervous system development oligodendrocyte differentiation glial cell differentiation regulation of oligodendrocyte differentiation apoptotic process involved in morphogenesis limb development appendage development embryonic limb morphogenesis embryonic morphogenesis embryonic appendage morphogenesis apoptotic process involved in development apoptotic process involved in embryonic digit morphogenesis appendage morphogenesis embryonic digit morphogenesis limb morphogenesis cardiac muscle tissue development muscle tissue morphogenesis striated muscle tissue development cardiac muscle tissue morphogenesis muscle organ development muscle tissue development muscle organ morphogenesis immune response immune system process heart trabecula morphogenesis trabecula morphogenesis blood vessel morphogenesis vasculogenesis coronary vasculature development vasculogenesis involved in coronary vascular morphogenesis coronary vasculature morphogenesis sensory organ development photoreceptor cell differentiation visual system development retina development in camera-type eye neural retina development eye morphogenesis retinal cone cell differentiation eye photoreceptor cell differentiation sensory system development camera-type eye morphogenesis eye development camera-type eye photoreceptor cell differentiation retina morphogenesis in camera-type eye sensory organ morphogenesis camera-type eye development coronary sinus valve morphogenesis heart valve development heart valve morphogenesis coronary sinus valve development epidermal cell differentiation epidermis development cell fate specification cell fate commitment epidermal cell fate specification left/right axis specification pattern specification process left/right pattern formation axis specification regionalization regulation of cellular component organization extracellular matrix organization regulation of cellular component biogenesis cellular component organization cellular component biogenesis cellular component assembly regulation of extracellular matrix assembly cellular component organization or biogenesis regulation of extracellular matrix organization extracellular matrix assembly extracellular structure organization external encapsulating structure organization regulation of cell adhesion molecule production negative regulation of cell adhesion molecule production cell adhesion molecule production negative regulation of muscle cell differentiation regulation of striated muscle cell differentiation myotube differentiation negative regulation of myotube differentiation regulation of myotube differentiation negative regulation of striated muscle cell differentiation striated muscle cell differentiation positive regulation of cell population proliferation aortic valve development semi-lunar valve development aortic valve morphogenesis head development forebrain development brain development positive regulation of locomotion regulation of cell motility positive regulation of cell migration regulation of locomotion positive regulation of cell motility regulation of cell migration cell migration cell motility locomotion compartment pattern specification anterior/posterior pattern specification rhythmic process ovulation cycle process gonad development reproductive system development reproductive process female gonad development sex differentiation multicellular organismal reproductive process female sex differentiation development of primary female sexual characteristics developmental process involved in reproduction ovulation cycle development of primary sexual characteristics reproductive structure development luteolysis regulation of cell-substrate adhesion cell-substrate adhesion negative regulation of cell-substrate adhesion cell migration involved in heart development cell migration involved in endocardial cushion formation cardiac chamber formation positive regulation of keratinocyte differentiation regulation of epidermal cell differentiation positive regulation of epidermis development positive regulation of epithelial cell differentiation skin development keratinocyte differentiation positive regulation of multicellular organismal process regulation of epidermis development regulation of keratinocyte differentiation positive regulation of epidermal cell differentiation cardiac endothelial cell differentiation endocardium development cardiocyte differentiation endocardial cell differentiation outflow tract morphogenesis negative regulation of collagen metabolic process collagen biosynthetic process regulation of collagen biosynthetic process regulation of collagen metabolic process negative regulation of collagen biosynthetic process collagen metabolic process somitogenesis chordate embryonic development segmentation embryo development ending in birth or egg hatching somite development regulation of somitogenesis positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of gene expression positive regulation of biosynthetic process positive regulation of macromolecule metabolic process cardiac ventricle morphogenesis in utero embryonic development regulation of molecular function regulation of catalytic activity negative regulation of molecular function negative regulation of catalytic activity defense response response to stress inflammatory response inflammatory response to antigenic stimulus prostate gland development gland development morphogenesis of an epithelium urogenital system development prostate gland epithelium morphogenesis prostate gland morphogenesis gland morphogenesis muscle hypertrophy regulation of muscle adaptation system process negative regulation of muscle hypertrophy regulation of system process striated muscle hypertrophy regulation of muscle system process muscle system process regulation of muscle hypertrophy regulation of cardiac muscle hypertrophy muscle adaptation regulation of response to stimulus cardiac muscle hypertrophy negative regulation of cardiac muscle hypertrophy cellular response to biotic stimulus response to tumor cell response to biotic stimulus cellular response to tumor cell pericardium morphogenesis morphogenesis of an epithelial sheet pericardium development cellular response to growth factor stimulus cellular response to vascular endothelial growth factor stimulus response to growth factor negative regulation of locomotion regulation of response to external stimulus endothelial cell migration negative regulation of chemotaxis negative regulation of endothelial cell migration taxis regulation of endothelial cell migration endothelial cell chemotaxis negative regulation of cell migration cell chemotaxis chemotaxis regulation of endothelial cell chemotaxis negative regulation of response to stimulus response to external stimulus regulation of chemotaxis negative regulation of response to external stimulus negative regulation of cell motility negative regulation of endothelial cell chemotaxis adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains adaptive immune response T-helper 17 type immune response transcription by RNA polymerase II negative regulation of myoblast differentiation regulation of myoblast differentiation myoblast differentiation respiratory tube development lung development respiratory system development positive regulation of epithelial cell proliferation regulation of epithelial cell proliferation epithelial cell proliferation cardiac ventricle formation cardiac right ventricle morphogenesis cardiac right ventricle formation organelle assembly plasma membrane bounded cell projection organization cell projection organization plasma membrane bounded cell projection assembly organelle organization cilium assembly cilium organization cell projection assembly artery development coronary artery morphogenesis artery morphogenesis determination of bilateral symmetry determination of left/right symmetry specification of symmetry regulation of stem cell proliferation stem cell proliferation astrocyte differentiation pulmonary valve morphogenesis pulmonary valve development positive regulation of cell communication cell surface receptor signaling pathway via STAT positive regulation of signal transduction positive regulation of receptor signaling pathway via STAT regulation of signal transduction positive regulation of receptor signaling pathway via JAK-STAT positive regulation of response to stimulus regulation of receptor signaling pathway via JAK-STAT regulation of signaling regulation of cell communication regulation of receptor signaling pathway via STAT cell surface receptor signaling pathway via JAK-STAT positive regulation of signaling regulation of epithelial cell proliferation involved in prostate gland development epithelial cell proliferation involved in prostate gland development positive regulation of DNA-templated transcription positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process negative regulation of biomineral tissue development regulation of biomineral tissue development biomineral tissue development positive regulation of apoptotic process involved in morphogenesis positive regulation of programmed cell death positive regulation of apoptotic process involved in development regulation of apoptotic process involved in development positive regulation of apoptotic process venous blood vessel development venous blood vessel morphogenesis coronary vein morphogenesis neural tube development animal organ regeneration regeneration small GTPase-mediated signal transduction regulation of small GTPase mediated signal transduction intracellular signal transduction regulation of intracellular signal transduction regulation of Ras protein signal transduction intracellular signaling cassette positive regulation of Ras protein signal transduction Ras protein signal transduction positive regulation of intracellular signal transduction positive regulation of small GTPase mediated signal transduction secretory columnal luminar epithelial cell differentiation involved in prostate glandular acinus development prostate glandular acinus development epithelial cell differentiation involved in prostate gland development glandular epithelial cell differentiation tube formation atrioventricular valve development atrioventricular valve morphogenesis branching morphogenesis of an epithelial tube morphogenesis of a branching structure epithelial tube morphogenesis morphogenesis of a branching epithelium tissue regeneration regulation of anoikis negative regulation of anoikis anoikis catabolic process protein catabolic process protein metabolic process macromolecule catabolic process cardiac atrium morphogenesis cardiac right atrium morphogenesis cardiac atrium development molting cycle process hair cycle epidermis morphogenesis skin epidermis development hair follicle development molting cycle hair cycle process hair follicle morphogenesis embryonic hindlimb morphogenesis hindlimb morphogenesis cellular response to interleukin-17 response to interleukin-17 response to cytokine cytokine-mediated signaling pathway response to peptide interleukin-17-mediated signaling pathway cellular response to cytokine stimulus positive regulation of endothelial cell differentiation regulation of endothelial cell differentiation cell migration involved in sprouting angiogenesis regulation of blood vessel endothelial cell migration angiogenesis negative regulation of blood vessel endothelial cell migration blood vessel endothelial cell migration regulation of cell migration involved in sprouting angiogenesis sprouting angiogenesis negative regulation of cell migration involved in sprouting angiogenesis cardiac vascular smooth muscle cell development vascular associated smooth muscle cell differentiation muscle cell development vascular associated smooth muscle cell development cardiac cell development cardiac vascular smooth muscle cell differentiation regulation of transcription by RNA polymerase II negative regulation of transcription by RNA polymerase II ventricular cardiac muscle tissue morphogenesis ventricular cardiac muscle tissue development ventricular trabecula myocardium morphogenesis regulation of photoreceptor cell differentiation negative regulation of photoreceptor cell differentiation negative regulation of neuron differentiation regulation of neuron differentiation positive regulation of ERK1 and ERK2 cascade positive regulation of MAPK cascade regulation of MAPK cascade MAPK cascade ERK1 and ERK2 cascade regulation of ERK1 and ERK2 cascade central nervous system neuron differentiation mitral valve morphogenesis atrioventricular valve formation mitral valve development mitral valve formation heart valve formation hair cell differentiation negative regulation of mechanoreceptor differentiation inner ear development regulation of mechanoreceptor differentiation regulation of inner ear auditory receptor cell differentiation negative regulation of epidermis development mechanoreceptor differentiation negative regulation of epidermal cell differentiation ear development inner ear receptor cell differentiation negative regulation of inner ear auditory receptor cell differentiation negative regulation of inner ear receptor cell differentiation inner ear auditory receptor cell differentiation regulation of inner ear receptor cell differentiation endocardium morphogenesis regulation of epithelial to mesenchymal transition positive regulation of cardiac epithelial to mesenchymal transition positive regulation of epithelial to mesenchymal transition regulation of cardiac epithelial to mesenchymal transition cell surface receptor protein serine/threonine kinase signaling pathway regulation of transmembrane receptor protein serine/threonine kinase signaling pathway positive regulation of BMP signaling pathway BMP signaling pathway enzyme-linked receptor protein signaling pathway cellular response to BMP stimulus regulation of BMP signaling pathway regulation of cellular response to growth factor stimulus positive regulation of transmembrane receptor protein serine/threonine kinase signaling pathway response to BMP transforming growth factor beta receptor superfamily signaling pathway venous endothelial cell differentiation axonogenesis plasma membrane bounded cell projection morphogenesis neuron projection development cell morphogenesis cell projection morphogenesis neuron projection morphogenesis axon guidance axon development cell morphogenesis involved in neuron differentiation neuron projection guidance neuron development regulation of aorta morphogenesis regulation of artery morphogenesis aorta morphogenesis positive regulation of artery morphogenesis positive regulation of aorta morphogenesis aorta development cardiac muscle cell myoblast differentiation cardioblast differentiation somatic stem cell division stem cell division cell division cardiac conduction system development atrioventricular node development negative regulation of gene expression negative regulation of cold-induced thermogenesis homeostatic process adaptive thermogenesis multicellular organismal-level homeostasis regulation of cold-induced thermogenesis cold-induced thermogenesis temperature homeostasis ossification regulation of ossification negative regulation of ossification biological process involved in interspecies interaction between organisms response to lipid response to other organism response to oxygen-containing compound response to lipopolysaccharide response to bacterium response to external biotic stimulus response to molecule of bacterial origin kidney epithelium development nephron tubule development renal system development distal tubule development renal tubule development nephron development kidney development nephron epithelium development positive regulation of nervous system development regulation of astrocyte differentiation positive regulation of gliogenesis positive regulation of neurogenesis positive regulation of astrocyte differentiation positive regulation of cell development positive regulation of glial cell differentiation spermatogenesis sexual reproduction male gamete generation gamete generation homeostasis of number of cells within a tissue anatomical structure homeostasis tissue homeostasis homeostasis of number of cells cardiac muscle cell proliferation muscle cell proliferation cardiac muscle tissue growth striated muscle cell proliferation response to decreased oxygen levels cellular response to oxygen levels cellular response to hypoxia cellular response to decreased oxygen levels cellular response to stress response to hypoxia response to oxygen levels response to abiotic stimulus regulation of growth regulation of cardiac muscle tissue growth positive regulation of cardiac muscle cell proliferation regulation of organ growth regulation of heart growth regulation of cardiac muscle cell proliferation positive regulation of developmental growth positive regulation of heart growth regulation of developmental growth positive regulation of organ growth positive regulation of growth positive regulation of cardiac muscle tissue growth negative regulation of signaling regulation of canonical Wnt signaling pathway canonical Wnt signaling pathway negative regulation of cell communication negative regulation of Wnt signaling pathway Wnt signaling pathway regulation of Wnt signaling pathway negative regulation of signal transduction negative regulation of canonical Wnt signaling pathway negative regulation of hematopoietic progenitor cell differentiation regulation of pro-B cell differentiation negative regulation of pro-B cell differentiation regulation of lymphoid progenitor cell differentiation regulation of hematopoietic progenitor cell differentiation hemopoiesis negative regulation of lymphoid progenitor cell differentiation pro-B cell differentiation lymphoid progenitor cell differentiation hematopoietic progenitor cell differentiation positive regulation of transcription by RNA polymerase II positive regulation of transcription of Notch receptor target trans-synaptic signaling nervous system process cell-cell signaling chemical synaptic transmission, postsynaptic chemical synaptic transmission synaptic signaling anterograde trans-synaptic signaling establishment of protein localization cellular localization nucleocytoplasmic transport nuclear transport intracellular transport protein localization to nucleus intercellular transport import into nucleus establishment of protein localization to organelle protein transport establishment of localization in cell macromolecule localization protein localization to organelle protein import into nucleus intracellular protein localization intracellular protein transport negative regulation of cellular response to growth factor stimulus negative regulation of BMP signaling pathway negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway skeletal muscle cell differentiation skeletal muscle tissue development skeletal muscle organ development epithelial cell fate commitment positive regulation of viral genome replication positive regulation of viral process viral life cycle regulation of viral life cycle regulation of viral process viral genome replication viral process regulation of viral genome replication negative regulation of epithelial cell proliferation embryonic heart tube development embryonic heart tube morphogenesis heart looping embryonic organ development embryonic organ morphogenesis determination of heart left/right asymmetry hepaticobiliary system development liver development humoral immune response regulation of osteoblast differentiation negative regulation of osteoblast differentiation osteoblast differentiation negative regulation of extracellular matrix organization regulation of extracellular matrix constituent secretion negative regulation of cellular component organization negative regulation of extracellular matrix constituent secretion extracellular matrix constituent secretion endoderm development collecting duct development cell differentiation in spinal cord spinal cord development cardiac left ventricle morphogenesis response to muramyl dipeptide response to nitrogen compound connective tissue development mesangial cell development kidney vasculature development pericyte cell differentiation renal system vasculature development mesangial cell differentiation epithelial cell differentiation involved in kidney development glomerular mesangium development glomerular mesangial cell development glomerular mesangial cell differentiation glomerulus development epithelial cell development cell differentiation involved in kidney development glomerulus vasculature development regulation of Notch signaling pathway positive regulation of Notch signaling pathway neuroblast proliferation regulation of neuroblast proliferation regulation of neural precursor cell proliferation positive regulation of neural precursor cell proliferation positive regulation of neuroblast proliferation neural precursor cell proliferation cell surface receptor signaling pathway involved in heart development cardioblast proliferation regulation of cardioblast proliferation animal organ formation regulation of secondary heart field cardioblast proliferation Notch signaling involved in heart development Notch signaling pathway involved in regulation of secondary heart field cardioblast proliferation heart formation cell proliferation involved in heart morphogenesis regulation of cell proliferation involved in heart morphogenesis auditory receptor cell fate commitment inner ear receptor cell fate commitment neuron fate commitment	protein-containing complex signaling receptor complex endosome membrane membrane-bounded organelle intracellular anatomical structure membrane endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle membrane cellular anatomical structure bounding membrane of organelle protein-containing complex signaling receptor complex endosome membrane membrane-bounded organelle intracellular anatomical structure membrane endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle membrane cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle organelle cytoplasm vesicle organelle membrane cell periphery plasma membrane organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum endoplasmic reticulum membrane Schaffer collateral - CA1 synapse synapse cell junction glutamatergic synapse cell-cell junction adherens junction anchoring junction MAML1-RBP-Jkappa- ICN1 complex nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen postsynaptic specialization membrane postsynaptic specialization postsynaptic density membrane synaptic membrane postsynaptic density postsynapse neuron to neuron synapse postsynaptic membrane asymmetric synapse plasma membrane region cytosol late endosome membrane late endosome Golgi membrane Golgi apparatus acrosomal vesicle secretory granule secretory vesicle apical part of cell apical plasma membrane cell surface extracellular region
D	Gamma-secretase subunit PEN-2	endopeptidase activator activity enzyme regulator activity enzyme activator activity peptidase regulator activity molecular function activator activity molecular function regulator activity peptidase activator activity endopeptidase regulator activity protein binding binding enzyme binding	membrane protein intracellular domain proteolysis proteolysis membrane protein proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process Notch receptor processing amyloid precursor protein catabolic process amyloid precursor protein metabolic process gene expression macromolecule biosynthetic process protein maturation membrane protein intracellular domain proteolysis proteolysis membrane protein proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process Notch receptor processing amyloid precursor protein catabolic process amyloid precursor protein metabolic process gene expression macromolecule biosynthetic process protein maturation biosynthetic process protein processing cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation cell communication Notch signaling pathway signal transduction membrane protein ectodomain proteolysis regulation of catalytic activity positive regulation of protein metabolic process positive regulation of peptidase activity positive regulation of biological process regulation of primary metabolic process positive regulation of molecular function positive regulation of metabolic process regulation of proteolysis regulation of endopeptidase activity positive regulation of macromolecule metabolic process positive regulation of cellular process regulation of protein metabolic process regulation of peptidase activity positive regulation of catalytic activity regulation of macromolecule metabolic process regulation of molecular function positive regulation of hydrolase activity positive regulation of endopeptidase activity regulation of hydrolase activity positive regulation of proteolysis regulation of metabolic process amyloid-beta metabolic process amyloid-beta formation	cellular anatomical structure membrane membrane-bounded organelle intracellular organelle intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endomembrane system Golgi membrane bounding membrane of organelle organelle membrane Golgi cisterna membrane cellular anatomical structure membrane membrane-bounded organelle intracellular organelle intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endomembrane system Golgi membrane bounding membrane of organelle organelle membrane Golgi cisterna membrane Golgi apparatus subcompartment organelle subcompartment Golgi cisterna Golgi stack endosome membrane endosome intracellular vesicle cytoplasmic vesicle membrane vesicle membrane cytoplasmic vesicle vesicle cell periphery plasma membrane presynapse synapse cell junction presynaptic membrane plasma membrane region synaptic membrane protein-containing complex catalytic complex plasma membrane protein complex membrane protein complex gamma-secretase complex endoplasmic reticulum endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum membrane
C	Gamma-secretase subunit APH-1A	protein-macromolecule adaptor activity molecular adaptor activity endopeptidase activator activity enzyme regulator activity enzyme activator activity peptidase regulator activity molecular function activator activity molecular function regulator activity peptidase activator activity endopeptidase regulator activity protein binding binding enzyme binding	primary metabolic process gene expression macromolecule biosynthetic process protein maturation biosynthetic process proteolysis protein processing metabolic process cellular process protein metabolic process macromolecule metabolic process amyloid precursor protein catabolic process amyloid-beta metabolic process amyloid precursor protein metabolic process primary metabolic process gene expression macromolecule biosynthetic process protein maturation biosynthetic process proteolysis protein processing metabolic process cellular process protein metabolic process macromolecule metabolic process amyloid precursor protein catabolic process amyloid-beta metabolic process amyloid precursor protein metabolic process amyloid-beta formation membrane protein intracellular domain proteolysis membrane protein proteolysis Notch receptor processing developmental process multicellular organism development multicellular organismal process metanephros development anatomical structure development animal organ development kidney development renal system development system development cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation cell communication Notch signaling pathway signal transduction membrane protein ectodomain proteolysis	cellular anatomical structure membrane membrane-bounded organelle intracellular anatomical structure Golgi cisterna membrane Golgi apparatus subcompartment Golgi apparatus organelle subcompartment Golgi cisterna intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle Golgi stack cellular anatomical structure membrane membrane-bounded organelle intracellular anatomical structure Golgi cisterna membrane Golgi apparatus subcompartment Golgi apparatus organelle subcompartment Golgi cisterna intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle Golgi stack cytoplasm organelle membrane cell periphery plasma membrane presynapse synapse cell junction presynaptic membrane plasma membrane region synaptic membrane protein-containing complex catalytic complex plasma membrane protein complex membrane protein complex gamma-secretase complex endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum endoplasmic reticulum membrane early endosome endosome intracellular vesicle cytoplasmic vesicle vesicle Golgi membrane bounding membrane of organelle endosome membrane cytoplasmic vesicle membrane vesicle membrane transport vesicle synaptic vesicle secretory vesicle exocytic vesicle
B	Presenilin-1	aspartic-type peptidase activity peptidase activity catalytic activity, acting on a protein hydrolase activity aspartic endopeptidase activity, intramembrane cleaving aspartic-type endopeptidase activity catalytic activity endopeptidase activity cell adhesion molecule binding cadherin binding protein binding binding PDZ domain binding protein domain specific binding aspartic-type peptidase activity peptidase activity catalytic activity, acting on a protein hydrolase activity aspartic endopeptidase activity, intramembrane cleaving aspartic-type endopeptidase activity catalytic activity endopeptidase activity cell adhesion molecule binding cadherin binding protein binding binding PDZ domain binding protein domain specific binding signaling receptor binding growth factor receptor binding beta-catenin binding molecular adaptor activity calcium channel activity monoatomic cation transmembrane transporter activity monoatomic ion channel activity monoatomic cation channel activity passive transmembrane transporter activity calcium ion transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity transporter activity metal ion transmembrane transporter activity transmembrane transporter activity ATPase binding enzyme binding	cellular response to stimulus regulation of biological process regulation of signaling regulation of cellular process cell surface receptor signaling pathway response to stimulus regulation of Wnt signaling pathway signaling regulation of canonical Wnt signaling pathway canonical Wnt signaling pathway biological regulation regulation of signal transduction cell communication regulation of response to stimulus cellular response to stimulus regulation of biological process regulation of signaling regulation of cellular process cell surface receptor signaling pathway response to stimulus regulation of Wnt signaling pathway signaling regulation of canonical Wnt signaling pathway canonical Wnt signaling pathway biological regulation regulation of signal transduction cell communication regulation of response to stimulus regulation of cell communication cellular process signal transduction Wnt signaling pathway inorganic ion homeostasis intracellular calcium ion homeostasis homeostatic process calcium ion homeostasis endoplasmic reticulum calcium ion homeostasis cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis cerebral cortex cell migration developmental process multicellular organismal process head development forebrain development animal organ development brain development nervous system development pallium development cerebral cortex development multicellular organism development telencephalon cell migration central nervous system development forebrain cell migration anatomical structure development cell migration telencephalon development cell motility system development behavior system process learning or memory nervous system process cognition memory negative regulation of signaling negative regulation of ERBB signaling pathway negative regulation of biological process cell surface receptor protein tyrosine kinase signaling pathway negative regulation of cell communication regulation of epidermal growth factor receptor signaling pathway negative regulation of cellular process epidermal growth factor receptor signaling pathway enzyme-linked receptor protein signaling pathway regulation of ERBB signaling pathway negative regulation of response to stimulus negative regulation of signal transduction negative regulation of epidermal growth factor receptor signaling pathway ERBB signaling pathway positive regulation of proteasomal protein catabolic process catabolic process positive regulation of protein metabolic process positive regulation of biological process proteasome-mediated ubiquitin-dependent protein catabolic process regulation of ubiquitin-dependent protein catabolic process macromolecule catabolic process regulation of primary metabolic process positive regulation of metabolic process positive regulation of ubiquitin-dependent protein catabolic process modification-dependent macromolecule catabolic process positive regulation of macromolecule metabolic process protein metabolic process positive regulation of cellular process regulation of protein metabolic process primary metabolic process proteasomal protein catabolic process regulation of macromolecule metabolic process protein catabolic process regulation of catabolic process positive regulation of protein catabolic process positive regulation of catabolic process regulation of proteasomal ubiquitin-dependent protein catabolic process modification-dependent protein catabolic process regulation of proteasomal protein catabolic process positive regulation of proteasomal ubiquitin-dependent protein catabolic process metabolic process ubiquitin-dependent protein catabolic process macromolecule metabolic process regulation of metabolic process regulation of protein catabolic process cerebellum development metencephalon development hindbrain development L-glutamate import across plasma membrane import into cell organic anion transport nitrogen compound transport carboxylic acid transmembrane transport carboxylic acid transport transport import across plasma membrane amino acid transmembrane transport L-amino acid transport establishment of localization L-glutamate import transmembrane transport organic acid transport amino acid transport localization acidic amino acid transport dicarboxylic acid transport L-alpha-amino acid transmembrane transport amino acid import across plasma membrane L-glutamate transmembrane transport cellular developmental process astrocyte differentiation cell development astrocyte activation glial cell development neurogenesis astrocyte development gliogenesis cell differentiation response to stress defense response cell activation glial cell differentiation glial cell activation inflammatory response neuroinflammatory response amyloid precursor protein catabolic process amyloid precursor protein metabolic process anatomical structure morphogenesis skeletal system development skeletal system morphogenesis animal organ morphogenesis axonogenesis cell projection organization regulation of cell differentiation regulation of neurogenesis neuron projection development regulation of cell development cell projection morphogenesis neuron differentiation neuron projection morphogenesis negative regulation of cellular component organization regulation of cell projection organization generation of neurons negative regulation of axonogenesis negative regulation of multicellular organismal process regulation of neuron projection development regulation of cellular component organization regulation of developmental process plasma membrane bounded cell projection morphogenesis cell morphogenesis cellular component organization regulation of nervous system development negative regulation of neurogenesis regulation of axonogenesis negative regulation of nervous system development regulation of multicellular organismal process negative regulation of cell differentiation cellular component organization or biogenesis negative regulation of cell projection organization regulation of anatomical structure morphogenesis regulation of multicellular organismal development plasma membrane bounded cell projection organization negative regulation of developmental process axon development negative regulation of neuron projection development cell morphogenesis involved in neuron differentiation negative regulation of cell development neuron development regulation of plasma membrane bounded cell projection organization vasculature development blood vessel development circulatory system development RNA metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process transcription by RNA polymerase II negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription negative regulation of RNA metabolic process Notch signaling pathway postsynapse organization regulation of postsynapse organization regulation of synapse organization cell junction organization regulation of synapse structure or activity synapse organization regulation of biological quality neuron cellular homeostasis ribonucleotide catabolic process pyridine nucleotide catabolic process aerobic respiration oxoacid metabolic process carbohydrate catabolic process carbohydrate derivative metabolic process organophosphate catabolic process regulation of generation of precursor metabolites and energy positive regulation of phosphate metabolic process nucleoside phosphate catabolic process organic acid metabolic process regulation of ATP metabolic process regulation of purine nucleotide catabolic process positive regulation of nucleotide catabolic process regulation of small molecule metabolic process glycolytic process regulation of nucleotide metabolic process phosphate-containing compound metabolic process pyridine-containing compound metabolic process small molecule metabolic process purine ribonucleotide catabolic process phosphorus metabolic process nucleoside phosphate metabolic process nicotinamide nucleotide metabolic process pyruvate metabolic process regulation of carbohydrate catabolic process positive regulation of phosphorus metabolic process purine nucleoside diphosphate metabolic process purine-containing compound catabolic process nucleotide metabolic process regulation of purine nucleotide metabolic process nucleobase-containing compound catabolic process positive regulation of ATP metabolic process nucleoside diphosphate metabolic process purine nucleoside diphosphate catabolic process nucleoside diphosphate catabolic process regulation of phosphorus metabolic process regulation of nucleotide catabolic process positive regulation of carbohydrate metabolic process nucleoside triphosphate metabolic process monocarboxylic acid metabolic process purine ribonucleotide metabolic process pyridine-containing compound catabolic process ribose phosphate metabolic process cellular respiration ATP metabolic process energy derivation by oxidation of organic compounds positive regulation of nucleotide metabolic process positive regulation of purine nucleotide catabolic process purine nucleotide metabolic process ribonucleotide metabolic process nucleobase-containing small molecule metabolic process purine ribonucleoside triphosphate metabolic process ribonucleoside diphosphate metabolic process ribonucleoside diphosphate catabolic process regulation of carbohydrate metabolic process nucleotide catabolic process purine nucleoside triphosphate metabolic process carbohydrate metabolic process purine nucleotide catabolic process carbohydrate derivative catabolic process positive regulation of glycolytic process ADP catabolic process carboxylic acid metabolic process generation of precursor metabolites and energy regulation of glycolytic process purine-containing compound metabolic process positive regulation of purine nucleotide metabolic process ADP metabolic process organophosphate metabolic process purine ribonucleoside diphosphate metabolic process positive regulation of small molecule metabolic process purine ribonucleoside diphosphate catabolic process positive regulation of cellular component organization positive regulation of amyloid fibril formation regulation of amyloid fibril formation amyloid fibril formation positive regulation of supramolecular fiber organization regulation of supramolecular fiber organization supramolecular fiber organization somitogenesis epithelium development chordate embryonic development segmentation anterior/posterior pattern specification pattern specification process embryo development tissue development regionalization embryo development ending in birth or egg hatching somite development anatomical structure formation involved in morphogenesis autophagosome assembly organelle assembly vacuole organization macroautophagy autophagy autophagosome organization cellular component biogenesis organelle organization cellular component assembly process utilizing autophagic mechanism negative regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death cell death negative regulation of apoptotic process apoptotic process programmed cell death brain morphogenesis negative regulation of apoptotic signaling pathway apoptotic signaling pathway regulation of apoptotic signaling pathway cell population proliferation epithelial cell proliferation neuron apoptotic process cell activation involved in immune response astrocyte activation involved in immune response immune response immune effector process immune system process intracellular signal transduction cellular localization establishment of localization in cell intracellular transport mitochondrial transport negative regulation of gene expression regulation of tumor necrosis factor production positive regulation of macromolecule biosynthetic process positive regulation of tumor necrosis factor superfamily cytokine production positive regulation of biosynthetic process cytokine production regulation of cytokine production tumor necrosis factor superfamily cytokine production positive regulation of tumor necrosis factor production tumor necrosis factor production regulation of tumor necrosis factor superfamily cytokine production positive regulation of gene expression positive regulation of multicellular organismal process positive regulation of cytokine production response to oxidative stress neuron projection maintenance neuron projection organization cellular response to nitrogen compound response to oxygen-containing compound response to nitrogen compound cellular response to amyloid-beta cellular response to oxygen-containing compound cellular response to chemical stimulus response to chemical response to amyloid-beta proteolysis membrane protein proteolysis membrane protein ectodomain proteolysis cellular response to stress DNA damage response cell fate specification cell fate commitment positive regulation of coagulation coagulation regulation of coagulation regulation of localization positive regulation of L-glutamate import across plasma membrane positive regulation of amine transport regulation of L-glutamate import across plasma membrane positive regulation of transmembrane transport regulation of amino acid transport regulation of amino acid transmembrane transport regulation of transport positive regulation of organic acid transport amine transport regulation of amino acid import across plasma membrane regulation of transmembrane transport positive regulation of transport positive regulation of amino acid transport regulation of organic acid transport regulation of amine transport regulation of resting membrane potential regulation of membrane potential choline transport organic cation transport negative regulation of protein catabolic process negative regulation of protein metabolic process negative regulation of ubiquitin-dependent protein catabolic process negative regulation of catabolic process positive regulation of programmed cell death positive regulation of apoptotic process positive regulation of dendritic spine development regulation of dendritic spine development positive regulation of developmental process dendrite development dendritic spine development forebrain generation of neurons Cajal-Retzius cell differentiation central nervous system neuron differentiation cerebral cortex neuron differentiation forebrain neuron differentiation neural tube development tube development dorsal/ventral pattern formation dorsal/ventral neural tube patterning neural tube patterning skin development skin morphogenesis lymphocyte activation leukocyte activation T cell activation involved in immune response T cell activation leukocyte activation involved in immune response lymphocyte activation involved in immune response protein catabolic process at postsynapse protein catabolic process at synapse sensory organ development eye development retina development in camera-type eye visual system development neural retina development camera-type eye development sensory system development regulation of synaptic vesicle cycle synaptic vesicle cycle regulation of vesicle-mediated transport vesicle-mediated transport vesicle-mediated transport in synapse heart morphogenesis embryonic heart tube development tube morphogenesis embryonic heart tube morphogenesis heart looping determination of bilateral symmetry epithelial tube morphogenesis embryonic organ development determination of left/right symmetry specification of symmetry embryonic organ morphogenesis heart development embryonic morphogenesis morphogenesis of an epithelium determination of heart left/right asymmetry tissue morphogenesis left/right pattern formation immune response-regulating cell surface receptor signaling pathway positive regulation of response to stimulus immune response-activating signaling pathway immune response-regulating signaling pathway positive regulation of immune response regulation of immune system process positive regulation of immune system process immune response-activating cell surface receptor signaling pathway T cell receptor signaling pathway regulation of immune response antigen receptor-mediated signaling pathway activation of immune response immune system development gland development hematopoietic or lymphoid organ development thymus development myeloid leukocyte differentiation myeloid dendritic cell activation hemopoiesis mononuclear cell differentiation myeloid leukocyte activation myeloid cell differentiation myeloid dendritic cell differentiation dendritic cell differentiation leukocyte differentiation establishment of protein localization protein transport macromolecule localization intracellular protein localization protein maturation protein processing negative regulation of neuron apoptotic process regulation of neuron apoptotic process limb development appendage development embryonic limb morphogenesis embryonic appendage morphogenesis appendage morphogenesis limb morphogenesis amyloid-beta metabolic process amyloid-beta formation regulation of receptor recycling receptor recycling receptor metabolic process positive regulation of receptor recycling positive regulation of signaling locomotion Notch receptor processing smooth endoplasmic reticulum calcium ion homeostasis regulation of synaptic plasticity trans-synaptic signaling modulation of chemical synaptic transmission cell-cell signaling chemical synaptic transmission synaptic signaling regulation of trans-synaptic signaling anterograde trans-synaptic signaling positive regulation of DNA-templated transcription positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process neuron migration cell adhesion cell-cell adhesion synaptic transmission, glutamatergic regulation of synaptic transmission, glutamatergic hematopoietic progenitor cell differentiation establishment of organelle localization regulated exocytosis synaptic vesicle targeting synaptic vesicle exocytosis vesicle targeting secretion by cell organelle localization signal release vesicle localization neurotransmitter secretion secretion establishment of vesicle localization export from cell neurotransmitter transport signal release from synapse exocytosis exocytic process post-embryonic development	membrane-bounded organelle intracellular anatomical structure nuclear membrane membrane nucleus intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope cellular anatomical structure organelle nuclear envelope organelle membrane endoplasmic reticulum membrane-bounded organelle intracellular anatomical structure nuclear membrane membrane nucleus intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope cellular anatomical structure organelle nuclear envelope organelle membrane endoplasmic reticulum smooth endoplasmic reticulum cytoplasm neuromuscular junction synapse cell junction Golgi membrane Golgi apparatus bounding membrane of organelle ciliary rootlet intracellular membraneless organelle cilium plasma membrane bounded cell projection cell projection cytoskeleton membraneless organelle transport vesicle intracellular vesicle presynapse cytoplasmic vesicle synaptic vesicle secretory vesicle vesicle exocytic vesicle mitochondrial membrane organelle inner membrane mitochondrion mitochondrial inner membrane mitochondrial envelope cell surface cell periphery plasma membrane membrane microdomain membrane raft protein-containing complex catalytic complex plasma membrane protein complex membrane protein complex gamma-secretase complex organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum membrane chromosome chromosomal region kinetochore chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome sarcolemma presynaptic membrane plasma membrane region synaptic membrane somatodendritic compartment dendrite dendritic tree neuron projection glutamatergic synapse rough endoplasmic reticulum dendritic shaft cell body neuronal cell body postsynapse cell cortex centrosome microtubule organizing center microtubule cytoskeleton lytic vacuole vesicle membrane lysosome vacuolar membrane azurophil granule vacuole lytic vacuole membrane cytoplasmic vesicle membrane lysosomal membrane secretory granule primary lysosome azurophil granule membrane secretory granule membrane growth cone axon distal axon site of polarized growth inclusion body aggresome membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen nuclear outer membrane organelle outer membrane outer membrane endosome membrane early endosome endosome early endosome membrane
A	Nicastrin	aspartic-type peptidase activity peptidase activity catalytic activity, acting on a protein hydrolase activity aspartic endopeptidase activity, intramembrane cleaving aspartic-type endopeptidase activity catalytic activity endopeptidase activity protein binding binding signaling receptor binding growth factor receptor binding protein-macromolecule adaptor activity molecular adaptor activity aspartic-type peptidase activity peptidase activity catalytic activity, acting on a protein hydrolase activity aspartic endopeptidase activity, intramembrane cleaving aspartic-type endopeptidase activity catalytic activity endopeptidase activity protein binding binding signaling receptor binding growth factor receptor binding protein-macromolecule adaptor activity molecular adaptor activity endopeptidase activator activity enzyme regulator activity enzyme activator activity peptidase regulator activity molecular function activator activity molecular function regulator activity peptidase activator activity endopeptidase regulator activity ATPase binding enzyme binding	regulation of cellular process positive regulation of glycoprotein metabolic process positive regulation of protein metabolic process positive regulation of biological process carbohydrate derivative metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process positive regulation of amyloid precursor protein biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process amyloid precursor protein biosynthetic process positive regulation of macromolecule metabolic process regulation of amyloid precursor protein biosynthetic process protein metabolic process regulation of cellular process positive regulation of glycoprotein metabolic process positive regulation of protein metabolic process positive regulation of biological process carbohydrate derivative metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process positive regulation of amyloid precursor protein biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process amyloid precursor protein biosynthetic process positive regulation of macromolecule metabolic process regulation of amyloid precursor protein biosynthetic process protein metabolic process amyloid precursor protein metabolic process positive regulation of cellular process regulation of glycoprotein biosynthetic process positive regulation of glycoprotein biosynthetic process carbohydrate derivative biosynthetic process regulation of biosynthetic process regulation of biological process regulation of protein metabolic process biological regulation glycoprotein biosynthetic process primary metabolic process regulation of macromolecule metabolic process glycoprotein metabolic process macromolecule biosynthetic process regulation of glycoprotein metabolic process biosynthetic process metabolic process cellular process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of metabolic process positive regulation of cell communication modulation of chemical synaptic transmission signaling cell communication long-term synaptic potentiation synaptic signaling regulation of biological quality regulation of synaptic plasticity trans-synaptic signaling regulation of signaling cell-cell signaling positive regulation of synaptic transmission chemical synaptic transmission regulation of trans-synaptic signaling anterograde trans-synaptic signaling regulation of long-term synaptic potentiation regulation of cell communication positive regulation of signaling behavior adult behavior multicellular organismal process developmental process oligodendrocyte development cellular developmental process central nervous system myelination cell development nervous system development glial cell development myelination multicellular organism development neurogenesis axon ensheathment in central nervous system central nervous system development gliogenesis oligodendrocyte differentiation glial cell differentiation axon ensheathment ensheathment of neurons cell differentiation anatomical structure development system development cellular response to nitrogen compound cellular response to stimulus response to dopamine response to stimulus cellular response to dopamine response to monoamine response to catecholamine cellular response to catecholamine stimulus signal transduction G protein-coupled dopamine receptor signaling pathway response to oxygen-containing compound response to nitrogen compound cellular response to oxygen-containing compound cellular response to chemical stimulus cellular response to monoamine stimulus response to chemical G protein-coupled receptor signaling pathway cell surface receptor signaling pathway glutamate receptor signaling pathway gene expression protein maturation proteolysis protein processing head development animal organ development brain development cerebellum development metencephalon development hindbrain development amyloid precursor protein catabolic process amyloid-beta metabolic process amyloid-beta formation cellular response to metal ion response to metal ion cellular response to calcium ion response to calcium ion membrane protein intracellular domain proteolysis membrane protein proteolysis cell population proliferation cell activation lymphocyte activation leukocyte proliferation leukocyte activation mononuclear cell proliferation immune system process T cell activation lymphocyte proliferation T cell proliferation multicellular organismal-level homeostasis homeostatic process homeostasis of number of cells myeloid cell homeostasis epithelial cell proliferation Notch receptor processing neuron apoptotic process apoptotic process cell death programmed cell death system process learning or memory nervous system process cognition short-term synaptic potentiation Notch signaling pathway membrane protein ectodomain proteolysis	cellular anatomical structure anchoring junction cell junction focal adhesion cell-substrate junction membrane membrane-bounded organelle intracellular anatomical structure pigment granule intracellular vesicle intracellular membrane-bounded organelle intracellular organelle melanosome cytoplasmic vesicle cellular anatomical structure anchoring junction cell junction focal adhesion cell-substrate junction membrane membrane-bounded organelle intracellular anatomical structure pigment granule intracellular vesicle intracellular membrane-bounded organelle intracellular organelle melanosome cytoplasmic vesicle organelle cytoplasm vesicle extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular membrane-bounded organelle lytic vacuole endomembrane system bounding membrane of organelle vesicle membrane lysosome vacuolar membrane azurophil granule vacuole lytic vacuole membrane cytoplasmic vesicle membrane lysosomal membrane secretory granule primary lysosome secretory vesicle azurophil granule membrane organelle membrane secretory granule membrane cell periphery sarcolemma plasma membrane presynapse synapse presynaptic membrane plasma membrane region synaptic membrane protein-containing complex catalytic complex plasma membrane protein complex membrane protein complex gamma-secretase complex organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum endoplasmic reticulum membrane early endosome endosome Golgi apparatus Golgi membrane endosome membrane transport vesicle synaptic vesicle exocytic vesicle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E	IPR013032	EGF-like, conserved site	Conserved Site
E	IPR022362	Neurogenic locus notch homolog protein 1	Family
E	IPR036770	Ankyrin repeat-containing domain superfamily	Homologous Superfamily
E	IPR000742	EGF-like domain	Domain
E	IPR051355	Notch and Slit guidance protein	Family
E	IPR035993	Notch-like domain superfamily	Homologous Superfamily
E	IPR011656	Notch, NODP domain	Domain
E	IPR010660	Notch, NOD domain	Domain
E	IPR008297	Notch	Family
E	IPR000800	Notch domain	Domain
E	IPR000152	EGF-type aspartate/asparagine hydroxylation site	PTM
E	IPR001881	EGF-like calcium-binding domain	Domain
E	IPR009030	Growth factor receptor cysteine-rich domain superfamily	Homologous Superfamily
E	IPR018097	EGF-like calcium-binding, conserved site	Conserved Site
E	IPR002110	Ankyrin repeat	Repeat
E	IPR049883	NOTCH1, EGF-like calcium-binding domain	Domain
E	IPR024600	Notch, C-terminal	Domain
D	IPR019379	Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit	Family
C	IPR009294	Gamma-secretase subunit Aph-1	Family
B	IPR006639	Presenilin/signal peptide peptidase	Family
B	IPR002031	Peptidase A22A, presenilin 1	Family
B	IPR042524	Presenilin, C-terminal	Homologous Superfamily
B	IPR001108	Peptidase A22A, presenilin	Family
A	IPR041084	Nicastrin, small lobe	Domain
A	IPR008710	Nicastrin	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
E	Pharos: P46531	aortic valve disease 1 Adams-Oliver syndrome glioblastoma squamous cell carcinoma T-cell leukemia Adams-Oliver syndrome 5 esophageal squamous cell carcinoma pilocytic astrocytoma head and neck squamous cell carcinoma astrocytic tumor juvenile pilocytic astrocytoma skin cancer breast carcinoma cancer malignant colon neoplasm aortic valve disease 1 Adams-Oliver syndrome glioblastoma squamous cell carcinoma T-cell leukemia Adams-Oliver syndrome 5 esophageal squamous cell carcinoma pilocytic astrocytoma head and neck squamous cell carcinoma astrocytic tumor juvenile pilocytic astrocytoma skin cancer breast carcinoma cancer malignant colon neoplasm cervical cancer congenital abnormality anaplastic astrocytoma gemistocytic astrocytoma protoplasmic astrocytoma skin neoplasm childhood cerebral astrocytoma Craniofacial Abnormalities adenoid cystic carcinoma fibrillary astrocytoma giant cell glioblastoma pancreatic ductal adenocarcinoma calcinosis lymphoma subependymal giant cell astrocytoma nervous system disorder heart valve disease salivary gland adenoid cystic carcinoma lung disease acute T cell leukemia urinary bladder carcinoma oligodendroglioma astrocytoma (excluding glioblastoma) heart, malformation of bladder benign neoplasm intestinal disease scoliosis breast adenocarcinoma liver disease breast disease lymphatic system disease squamous cell lung carcinoma malignant ependymoma tetralogy of fallot ulcerative colitis congenital anemia Marfan syndrome urinary bladder neoplasm diffuse astrocytoma aortic valve calcification benign colon neoplasm hematologic disease rheumatoid arthritis bladder carcinoma in situ breast cancer lung carcinoma cerebral astrocytoma malignant glioma thoracic aortic aneurysm colonic neoplasm urinary bladder cancer medulloblastoma Adams-Oliver syndrome 1 Crohn disease adult T-cell leukemia/lymphoma Ehlers-Danlos syndrome gastric carcinoma aortic valve disease pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia primitive neuroectodermal tumor inflammatory bowel disease bone disease
D	Pharos: Q9NZ42	acne inversa, familial, 2 Hidradenitis suppurativa, familial Dowling-Degos disease Alzheimer disease Dowling-Degos disease 1 diabetes mellitus hidradenitis suppurativa
C	Pharos: Q96BI3	Alzheimer disease bipolar disorder invasive ductal breast carcinoma malignant glioma ovarian cancer atopic eczema chronic obstructive pulmonary disease large cell medulloblastoma medulloblastoma pilocytic astrocytoma atypical teratoid rhabdoid tumor glioblastoma malignant ependymoma osteosarcoma
B	Pharos: P49768	Alzheimer disease amyloidosis Pick disease frontotemporal dementia dilated cardiomyopathy neurodegenerative disease dilated cardiomyopathy 1U perinatal asphyxia cardiomyopathy semantic dementia acne inversa, familial, 3 Hidradenitis suppurativa, familial Alzheimer disease 3 behavioral variant of frontotemporal dementia depressive disorder Alzheimer disease amyloidosis Pick disease frontotemporal dementia dilated cardiomyopathy neurodegenerative disease dilated cardiomyopathy 1U perinatal asphyxia cardiomyopathy semantic dementia acne inversa, familial, 3 Hidradenitis suppurativa, familial Alzheimer disease 3 behavioral variant of frontotemporal dementia depressive disorder ovarian cancer dilated cardiomyopathy 1A Down syndrome familial isolated dilated cardiomyopathy subependymal giant cell astrocytoma adenoma ulcerative colitis juvenile dermatomyositis Parkinson disease progressive non-fluent aphasia acquired metabolic disease toxic encephalopathy IgA glomerulonephritis dementia osteosarcoma progressive supranuclear palsy familial dilated cardiomyopathy hidradenitis suppurativa tuberculosis intellectual disability Alzheimer disease 4 learning disability malignant mesothelioma
A	Pharos: Q92542	Alzheimer disease acne inversa, familial, 1 hidradenitis suppurativa Hidradenitis suppurativa, familial astrocytic tumor glioblastoma large cell medulloblastoma oligodendroglioma atypical teratoid rhabdoid tumor malignant ependymoma osteosarcoma primitive neuroectodermal tumor malignant glioma pilocytic astrocytoma

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, C, D, E	OPM	Transmembrane	Alpha-helical polytopic	Peptidase AD	Gamma-secretase

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, C, D, E	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, B, C, D, E	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B, C, D, E	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Intramembrane Proteases	γ-secretase in complex with Notch-100

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

Prepare Data

Validate Data

Deposit Data

Help and Resources

.id_divider{ color: #ccc; padding: 0 10px 0 10px; } .extended_id_info{ color: #ccc; font-size: 18px; position: relative; top: -10px; left: 4px; } 6IDF | pdb_00006idf