6IRH
Structure of the human GluN1/GluN2A NMDA receptor in the glutamate/glycine-bound state at pH 6.3, Class III
External Resource: Annotation
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth C] | Lig_chan | e6irhC3 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: Lig_chan | ECOD (1.6) |
A [auth C] | ANF_receptor_3rd | e6irhC2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Periplasmic binding protein-like I | F: ANF_receptor_3rd | ECOD (1.6) |
A [auth C] | ANF_receptor_2nd | e6irhC5 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Periplasmic binding protein-like I | F: ANF_receptor_2nd | ECOD (1.6) |
A [auth C] | SBP_bac_3_1st | e6irhC4 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_3_1st | ECOD (1.6) |
A [auth C] | Lig_chan_1 | e6irhC1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: Lig_chan_1 | ECOD (1.6) |
C [auth A] | Lig_chan | e6irhA5 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: Lig_chan | ECOD (1.6) |
C [auth A] | ANF_receptor_3rd | e6irhA4 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Periplasmic binding protein-like I | F: ANF_receptor_3rd | ECOD (1.6) |
C [auth A] | ANF_receptor_2nd | e6irhA3 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Periplasmic binding protein-like I | F: ANF_receptor_2nd | ECOD (1.6) |
C [auth A] | SBP_bac_3_1st | e6irhA1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_3_1st | ECOD (1.6) |
C [auth A] | Lig_chan_1 | e6irhA2 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: Lig_chan_1 | ECOD (1.6) |
B [auth D] | Lig_chan | e6irhD2 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: Lig_chan | ECOD (1.6) |
B [auth D] | ANF_receptor_3rd | e6irhD5 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Periplasmic binding protein-like I | F: ANF_receptor_3rd | ECOD (1.6) |
B [auth D] | ANF_receptor_2nd | e6irhD4 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Periplasmic binding protein-like I | F: ANF_receptor_2nd | ECOD (1.6) |
B [auth D] | Lig_chan_1 | e6irhD3 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: Lig_chan_1 | ECOD (1.6) |
B [auth D] | Lig_chan_5 | e6irhD1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: Lig_chan_5 | ECOD (1.6) |
D [auth B] | Lig_chan | e6irhB2 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: Lig_chan | ECOD (1.6) |
D [auth B] | ANF_receptor_3rd | e6irhB3 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Periplasmic binding protein-like I | F: ANF_receptor_3rd | ECOD (1.6) |
D [auth B] | ANF_receptor_2nd | e6irhB1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Periplasmic binding protein-like I | F: ANF_receptor_2nd | ECOD (1.6) |
D [auth B] | Lig_chan_1 | e6irhB5 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: Lig_chan_1 | ECOD (1.6) |
D [auth B] | Lig_chan_5 | e6irhB4 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: Lig_chan_5 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth C], C [auth A] | PF00060 | Ligand-gated ion channel (Lig_chan) | Ligand-gated ion channel | - | Family |
A [auth C], C [auth A] | PF01094 | Receptor family ligand binding region (ANF_receptor) | Receptor family ligand binding region | - | Family |
A [auth C], C [auth A] | PF10613 | Ligated ion channel L-glutamate- and glycine-binding site (Lig_chan-Glu_bd) | Ligated ion channel L-glutamate- and glycine-binding site | This region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF ... | Domain |
B [auth D], D [auth B] | PF01094 | Receptor family ligand binding region (ANF_receptor) | Receptor family ligand binding region | - | Family |
B [auth D], D [auth B] | PF10613 | Ligated ion channel L-glutamate- and glycine-binding site (Lig_chan-Glu_bd) | Ligated ion channel L-glutamate- and glycine-binding site | This region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |