6J0N

Cryo-EM Structure of an Extracellular Contractile Injection System, baseplate in extended state, refined in C6 symmetry


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth F]GPW_gp25e6j0nF1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: GPW_gp25ECOD (1.6)
D [auth G]GPW_gp25e6j0nG1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: GPW_gp25ECOD (1.6)
F [auth I]GPW_gp25e6j0nI1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: GPW_gp25ECOD (1.6)
A [auth D]GPW_gp25e6j0nD1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: GPW_gp25ECOD (1.6)
B [auth E]GPW_gp25e6j0nE1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: GPW_gp25ECOD (1.6)
E [auth H]GPW_gp25e6j0nH1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: GPW_gp25ECOD (1.6)
W [auth Z]Phage_sheath_1Ce6j0nZ2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
W [auth Z]Phage_sheath_1e6j0nZ1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
X [auth a]Phage_sheath_1Ce6j0na2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
X [auth a]Phage_sheath_1e6j0na1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
S [auth V]Phage_sheath_1Ce6j0nV2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
S [auth V]Phage_sheath_1e6j0nV1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
T [auth W]Phage_sheath_1Ce6j0nW2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
T [auth W]Phage_sheath_1e6j0nW1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
U [auth X]Phage_sheath_1Ce6j0nX2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
U [auth X]Phage_sheath_1e6j0nX1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
V [auth Y]Phage_sheath_1Ce6j0nY2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
V [auth Y]Phage_sheath_1e6j0nY1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
GA [auth j]Phage_sheath_1Ce6j0nj2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
GA [auth j]Phage_sheath_1e6j0nj1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
HA [auth k]Phage_sheath_1Ce6j0nk2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
HA [auth k]Phage_sheath_1e6j0nk1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
IA [auth l]Phage_sheath_1Ce6j0nl2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
IA [auth l]Phage_sheath_1e6j0nl1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
JA [auth m]Phage_sheath_1Ce6j0nm2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
JA [auth m]Phage_sheath_1e6j0nm1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
EA [auth h]Phage_sheath_1Ce6j0nh2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
EA [auth h]Phage_sheath_1e6j0nh1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
FA [auth i]Phage_sheath_1Ce6j0ni2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
FA [auth i]Phage_sheath_1e6j0ni1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
KA [auth n]T6SS_HCPe6j0nn1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: T6SS_HCPECOD (1.6)
NA [auth q]T6SS_HCPe6j0nq1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: T6SS_HCPECOD (1.6)
PA [auth s]T6SS_HCPe6j0ns1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: T6SS_HCPECOD (1.6)
LA [auth o]T6SS_HCPe6j0no1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: T6SS_HCPECOD (1.6)
MA [auth p]T6SS_HCPe6j0np1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: T6SS_HCPECOD (1.6)
OA [auth r]T6SS_HCPe6j0nr1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: T6SS_HCPECOD (1.6)
SA [auth 3]UNK_F_TYPEe6j0n31 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: UNK_F_TYPEECOD (1.6)
TA [auth 4]UNK_F_TYPEe6j0n41 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: UNK_F_TYPEECOD (1.6)
BB [auth z]UNK_F_TYPEe6j0nz1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: UNK_F_TYPEECOD (1.6)
QA [auth 1]UNK_F_TYPEe6j0n11 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: UNK_F_TYPEECOD (1.6)
RA [auth 2]UNK_F_TYPEe6j0n21 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: UNK_F_TYPEECOD (1.6)
UA [auth 5]UNK_F_TYPEe6j0n51 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: UNK_F_TYPEECOD (1.6)
AB [auth y]Phage_sheath_1Ce6j0ny2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
AB [auth y]Phage_sheath_1e6j0ny1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
WA [auth u]Phage_sheath_1Ce6j0nu2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
WA [auth u]Phage_sheath_1e6j0nu1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
YA [auth w]Phage_sheath_1Ce6j0nw1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
YA [auth w]Phage_sheath_1e6j0nw2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
ZA [auth x]Phage_sheath_1Ce6j0nx2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
ZA [auth x]Phage_sheath_1e6j0nx1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
VA [auth t]Phage_sheath_1Ce6j0nt2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
VA [auth t]Phage_sheath_1e6j0nt1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
XA [auth v]Phage_sheath_1Ce6j0nv2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
XA [auth v]Phage_sheath_1e6j0nv1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF19266Contractile injection system tube protein (CIS_tube)Contractile injection system tube protein- Family
PF04984Phage tail sheath protein subtilisin-like domain (Phage_sheath_1)Phage tail sheath protein subtilisin-like domainThis entry represents the second domain in a variety of phage tail sheath proteins. According to ECOD this domain has a subtilisin-like structure.Domain
PF04965Baseplate wedge protein gp25 (GPW_gp25)Baseplate wedge protein gp25This family represents T4 phage gp25 protein and gp25-like proteins, found in several systems, including contractile tail bacteriophages, the type VI secretion system (T6SS) and R-type pyocins, which constitute a multiprotein tubular apparatus to att ...This family represents T4 phage gp25 protein and gp25-like proteins, found in several systems, including contractile tail bacteriophages, the type VI secretion system (T6SS) and R-type pyocins, which constitute a multiprotein tubular apparatus to attach to and penetrate host cell membranes. Gp25 is a component of the conserved wedge in the inner part of the baseplate and serves as a nucleus for sheath polymerisation, playing a critical role in sheath assembly and contraction [1,2]. The EPR motif (Glu-Pro-Arg, residues 85-87 of gp25) is conserved across all members of the family including orthologues from the RpoS-mediated general stress response system (called IraD) [3,4]. This motif interacts with the 'core bundle' composed of orthologues of T4 gp6 and gp7 proteins in contractile injection systems.
Domain
PF17482Phage tail sheath C-terminal domain (Phage_sheath_1C)Phage tail sheath C-terminal domainThis entry represents the C-terminal domain in a variety of phage tail sheath proteins [4].Domain
PF04984Phage tail sheath protein subtilisin-like domain (Phage_sheath_1)Phage tail sheath protein subtilisin-like domainThis entry represents the second domain in a variety of phage tail sheath proteins. According to ECOD this domain has a subtilisin-like structure.Domain
PF06841T4-like virus tail tube protein gp19 (Phage_T4_gp19)T4-like virus tail tube protein gp19- Family
PF17482Phage tail sheath C-terminal domain (Phage_sheath_1C)Phage tail sheath C-terminal domainThis entry represents the C-terminal domain in a variety of phage tail sheath proteins [4].Domain
PF06841T4-like virus tail tube protein gp19 (Phage_T4_gp19)T4-like virus tail tube protein gp19- Family
PF17482Phage tail sheath C-terminal domain (Phage_sheath_1C)Phage tail sheath C-terminal domainThis entry represents the C-terminal domain in a variety of phage tail sheath proteins [4].Domain
PF06841T4-like virus tail tube protein gp19 (Phage_T4_gp19)T4-like virus tail tube protein gp19- Family
PF06841T4-like virus tail tube protein gp19 (Phage_T4_gp19)T4-like virus tail tube protein gp19- Family

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR007048IraD/Gp25-likeDomain
IPR020287Tail sheath protein, C-terminal domainDomain
IPR052042Bacteriophage Tail Sheath Structural ProteinFamily
IPR045361Contractile injection system tube protein, N-terminal domainDomain
IPR020287Tail sheath protein, C-terminal domainDomain
IPR035089Tail sheath protein, subtilisin-like domainDomain
IPR052042Bacteriophage Tail Sheath Structural ProteinFamily
IPR011747Conserved hypothetical protein CHP02241Family
IPR010667Bacteriophage T4, Gp19, tail tubeFamily
IPR011747Conserved hypothetical protein CHP02241Family
IPR010667Bacteriophage T4, Gp19, tail tubeFamily
IPR020287Tail sheath protein, C-terminal domainDomain
IPR035089Tail sheath protein, subtilisin-like domainDomain
IPR052042Bacteriophage Tail Sheath Structural ProteinFamily