Cryo-EM structure of the C2S2M2L2-type PSII-LHCII supercomplex from Chlamydomonas reihardtii
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| A [auth 1] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8094539 | 3000343 | SCOP2B (2022-06-29) |
| BA [auth Y] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8094539 | 3000343 | SCOP2B (2022-06-29) |
| CB [auth y] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8094539 | 3000343 | SCOP2B (2022-06-29) |
| DA [auth 0] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8094539 | 3000343 | SCOP2B (2022-06-29) |
| EA [auth 7] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8094539 | 3000343 | SCOP2B (2022-06-29) |
| F [auth 6] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8094539 | 3000343 | SCOP2B (2022-06-29) |
| B [auth 2] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8094579 | 3000343 | SCOP2B (2022-06-29) |
| C [auth 3] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8094579 | 3000343 | SCOP2B (2022-06-29) |
| E [auth 5] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8094579 | 3000343 | SCOP2B (2022-06-29) |
| FA [auth 8] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8094579 | 3000343 | SCOP2B (2022-06-29) |
| HA [auth p] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8094579 | 3000343 | SCOP2B (2022-06-29) |
| T [auth N] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8094579 | 3000343 | SCOP2B (2022-06-29) |
| WA [auth n] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8094579 | 3000343 | SCOP2B (2022-06-29) |
| GA [auth 9] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8094579 | 3000343 | SCOP2B (2022-06-29) |
| D [auth 4] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8094615 | 3000343 | SCOP2B (2022-06-29) |
| IA [auth q] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8094615 | 3000343 | SCOP2B (2022-06-29) |
| M [auth G] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8094615 | 3000343 | SCOP2B (2022-06-29) |
| PA [auth g] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8094615 | 3000343 | SCOP2B (2022-06-29) |
| G [auth A] | SCOP2B Superfamily | Bacterial photosystem II reaction centre, L and M subunits | 8094419 | 3000736 | SCOP2B (2022-06-29) |
| JA [auth a] | SCOP2B Superfamily | Bacterial photosystem II reaction centre, L and M subunits | 8094419 | 3000736 | SCOP2B (2022-06-29) |
| H [auth B] | SCOP2B Superfamily | Photosystem II antenna protein-like | 8094573 | 3001674 | SCOP2B (2022-06-29) |
| KA [auth b] | SCOP2B Superfamily | Photosystem II antenna protein-like | 8094573 | 3001674 | SCOP2B (2022-06-29) |
| I [auth C] | SCOP2B Superfamily | Photosystem II antenna protein-like | 8094477 | 3001674 | SCOP2B (2022-06-29) |
| LA [auth c] | SCOP2B Superfamily | Photosystem II antenna protein-like | 8094477 | 3001674 | SCOP2B (2022-06-29) |
| J [auth D] | SCOP2B Superfamily | Bacterial photosystem II reaction centre, L and M subunits | 8094383 | 3000736 | SCOP2B (2022-06-29) |
| MA [auth d] | SCOP2B Superfamily | Bacterial photosystem II reaction centre, L and M subunits | 8094383 | 3000736 | SCOP2B (2022-06-29) |
| NA [auth e] | SCOP2B Superfamily | Cytochrome b559 subunits | 8094631 | 3001602 | SCOP2B (2022-06-29) |
| K [auth E] | SCOP2 Family | Cytochrome b559 subunits | 8094630 | 4002681 | SCOP2 (2022-06-29) |
| K [auth E] | SCOP2 Superfamily | Cytochrome b559 subunits | 8094631 | 3001602 | SCOP2 (2022-06-29) |
| L [auth F] | SCOP2B Superfamily | Cytochrome b559 subunits | 8093904 | 3001602 | SCOP2B (2022-06-29) |
| OA [auth f] | SCOP2B Superfamily | Cytochrome b559 subunits | 8093904 | 3001602 | SCOP2B (2022-06-29) |
| N [auth H] | SCOP2B Superfamily | Photosystem II 10 kDa phosphoprotein PsbH | 8094651 | 3001547 | SCOP2B (2022-06-29) |
| QA [auth h] | SCOP2B Superfamily | Photosystem II 10 kDa phosphoprotein PsbH | 8094651 | 3001547 | SCOP2B (2022-06-29) |
| O [auth I] | SCOP2 Family | PsbI-like | 8093999 | 4002676 | SCOP2 (2022-06-29) |
| O [auth I] | SCOP2 Superfamily | Photosystem II reaction center protein I, PsbI | 8094000 | 3001590 | SCOP2 (2022-06-29) |
| RA [auth i] | SCOP2B Superfamily | Photosystem II reaction center protein I, PsbI | 8094000 | 3001590 | SCOP2B (2022-06-29) |
| SA [auth j] | SCOP2B Superfamily | Photosystem II reaction center protein J, PsbJ | 8094937 | 3001534 | SCOP2B (2022-06-29) |
| P [auth J] | SCOP2B Superfamily | Photosystem II reaction center protein J, PsbJ | 8094937 | 3001534 | SCOP2B (2022-06-29) |
| Q [auth K] | SCOP2B Superfamily | Photosystem II reaction center protein K, PsbK | 8093946 | 3001585 | SCOP2B (2022-06-29) |
| TA [auth k] | SCOP2B Superfamily | Photosystem II reaction center protein K, PsbK | 8093946 | 3001585 | SCOP2B (2022-06-29) |
| R [auth L] | SCOP2B Superfamily | Photosystem II reaction center protein L, PsbL | 8094509 | 3001523 | SCOP2B (2022-06-29) |
| UA [auth l] | SCOP2B Superfamily | Photosystem II reaction center protein L, PsbL | 8094509 | 3001523 | SCOP2B (2022-06-29) |
| S [auth M] | SCOP2B Superfamily | Photosystem II reaction center protein M, PsbM | 8094094 | 3001573 | SCOP2B (2022-06-29) |
| VA [auth m] | SCOP2B Superfamily | Photosystem II reaction center protein M, PsbM | 8094094 | 3001573 | SCOP2B (2022-06-29) |
| FB [auth o] | SCOP2B Superfamily | OMPA barrel-like | 8095525 | 3000208 | SCOP2B (2022-06-29) |
| U [auth O] | SCOP2B Superfamily | OMPA barrel-like | 8095525 | 3000208 | SCOP2B (2022-06-29) |
| EB [auth r] | SCOP2 Family | Chlorophyll a-b binding protein | 8100369 | 4001763 | SCOP2 (2022-06-29) |
| EB [auth r] | SCOP2 Superfamily | Chlorophyll a-b binding protein | 8100370 | 3000343 | SCOP2 (2022-06-29) |
| V [auth R] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8100370 | 3000343 | SCOP2B (2022-06-29) |
| XA [auth s] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8100486 | 3000343 | SCOP2B (2022-06-29) |
| W [auth S] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8100486 | 3000343 | SCOP2B (2022-06-29) |
| CA [auth Z] | SCOP2B Superfamily | PsbZ-like | 8094160 | 3001624 | SCOP2B (2022-06-29) |
| DB [auth z] | SCOP2B Superfamily | PsbZ-like | 8094160 | 3001624 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A [auth 1] | PSII | e6kad11 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| BA [auth Y] | PSII | e6kadY1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| CB [auth y] | PSII | e6kady1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| DA [auth 0] | PSII | e6kad01 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| EA [auth 7] | PSII | e6kad71 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| F [auth 6] | PSII | e6kad61 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| B [auth 2] | PSII | e6kad21 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| C [auth 3] | PSII | e6kad31 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| E [auth 5] | PSII | e6kad51 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| FA [auth 8] | PSII | e6kad81 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| HA [auth p] | PSII | e6kadp1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| T [auth N] | PSII | e6kadN1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| WA [auth n] | PSII | e6kadn1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| GA [auth 9] | PSII | e6kad91 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| D [auth 4] | PSII | e6kad41 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| IA [auth q] | PSII | e6kadq1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| M [auth G] | PSII | e6kadG1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| PA [auth g] | PSII | e6kadg1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| G [auth A] | PSII | e6kadA1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| JA [auth a] | PSII | e6kada1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| H [auth B] | PSII | e6kadB1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| KA [auth b] | PSII | e6kadb1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| I [auth C] | PSII | e6kadC1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| LA [auth c] | PSII | e6kadc1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| J [auth D] | PSII | e6kadD1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| MA [auth d] | PSII | e6kadd1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| NA [auth e] | PSII | e6kade1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| K [auth E] | PSII | e6kadE1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| L [auth F] | PSII | e6kadF1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| OA [auth f] | PSII | e6kadf1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| N [auth H] | PSII | e6kadH1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| QA [auth h] | PSII | e6kadh1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| O [auth I] | PSII | e6kadI1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| RA [auth i] | PSII | e6kadi1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| SA [auth j] | PSII | e6kadj1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| P [auth J] | PSII | e6kadJ1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| Q [auth K] | PSII | e6kadK1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| TA [auth k] | PSII | e6kadk1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| R [auth L] | PSII | e6kadL1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| UA [auth l] | PSII | e6kadl1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| S [auth M] | PSII | e6kadM1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| VA [auth m] | PSII | e6kadm1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| FB [auth o] | PSII | e6kado1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| U [auth O] | PSII | e6kadO1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| EB [auth r] | PSII | e6kadr1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| V [auth R] | PSII | e6kadR1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| XA [auth s] | PSII | e6kads1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| W [auth S] | PSII | e6kadS1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| X [auth T] | PSII | e6kadT1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| YA [auth t] | PSII | e6kadt1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| Y [auth V] | PSII | e6kadV1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| ZA [auth v] | PSII | e6kadv1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| AB [auth w] | PSII | e6kadw1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| Z [auth W] | PSII | e6kadW1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| AA [auth X] | PSII | e6kadX1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| BB [auth x] | PSII | e6kadx1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| CA [auth Z] | PSII | e6kadZ1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |
| DB [auth z] | PSII | e6kadz1 | A: alpha bundles | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: PSII | ECOD (develop294) |














