Cryo-EM structure of echovirus 11 complexed with its attaching receptor CD55 at pH 7.4
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| E | d6la5e1 | Small proteins | Complement control module/SCR domain | Complement control module/SCR domain | Complement control module/SCR domain | Complement decay-accelerating factor (Daf, CD55) | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
| C | d6la5c_ | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | Picornaviridae-like VP (VP1, VP2, VP3 and VP4) | automated matches | (Echovirus E11 ) [TaxId: 12078 ], | SCOPe (2.08) |
| A | d6la5a_ | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | Picornaviridae-like VP (VP1, VP2, VP3 and VP4) | automated matches | (Echovirus E11 ) [TaxId: 12078 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| E | SCOP2B Superfamily | Sushi/CCP/SCR domain | 8044483 | 3000902 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | Sushi/CCP/SCR domain | 8044485 | 3000902 | SCOP2B (2022-06-29) |
| C | SCOP2 Family | Picornaviridae-like VP (VP1, VP2, VP3 and VP4) | 8101254 | 4003466 | SCOP2 (2022-06-29) |
| C | SCOP2 Superfamily | Positive stranded ssRNA viruses-like | 8101255 | 3000918 | SCOP2 (2022-06-29) |
| A | SCOP2 Family | Picornaviridae-like VP (VP1, VP2, VP3 and VP4) | 8101612 | 4003466 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | Positive stranded ssRNA viruses-like | 8101613 | 3000918 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| E | Sushi_3 | e6la5E2 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: Complement control module/SCR domain | F: Sushi_3 | ECOD (1.6) |
| E | Sushi_1 | e6la5E1 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: Complement control module/SCR domain | F: Sushi_1 | ECOD (1.6) |
| D | Pico_P1A_N | e6la5D1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Pico_P1A_N | ECOD (1.6) |
| C | Rhv_3 | e6la5C1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Rhv_3 | ECOD (1.6) |
| B | Rhv_1 | e6la5B1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Rhv_1 | ECOD (1.6) |
| A | Rhv_5 | e6la5A1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Rhv_5 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00084 | Sushi repeat (SCR repeat) (Sushi) | Sushi repeat (SCR repeat) | Domain | ||














