6LML | pdb_00006lml

Cryo-EM structure of the human glucagon receptor in complex with Gi1


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyRas-like P-loop GTPases 8056779 3002022 SCOP2B (2022-06-29)
F [auth R]SCOP2B SuperfamilyFnI-like domain 8091140 3000979 SCOP2B (2022-06-29)
F [auth R]SCOP2B SuperfamilyG protein-coupled receptor-like 8091138 3000473 SCOP2B (2022-06-29)
F [auth R]SCOP2B SuperfamilyG protein-coupled receptor-like 8091138 3000473 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AOTCace_Ne6lmlA1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Class I glutamine amidotransferase-likeF: OTCace_NECOD (v294.1)
BCation_ATPase_C,Cation_ATPase_Ne6lmlB1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Cation_ATPase_C,Cation_ATPase_NECOD (v294.1)
CCation_ATPase_C,Cation_ATPase_Ne6lmlC1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Cation_ATPase_C,Cation_ATPase_NECOD (v294.1)
DABC_trane6lmlD1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: ABC_tranECOD (v294.1)
F [auth R]Cation_ATPase_C,Cation_ATPase_Ne6lmlR1 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Cation_ATPase_C,Cation_ATPase_NECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00503G-protein alpha subunit (G-alpha)G-protein alpha subunitG proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like ...G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site [3]. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA [3].
Domain
PF00123Peptide hormone (Hormone_2)Peptide hormone- Family
F [auth R]PF02793Hormone receptor domain (HRM)Hormone receptor domain- Family
F [auth R]PF000027 transmembrane receptor (Secretin family) (7tm_2)7 transmembrane receptor (Secretin family)This family is known as Family B, the secretin-receptor family or family 2 of the G-protein-coupled receptors (GCPRs). They have been described in many animal species, but not in plants, fungi or prokaryotes. Three distinct sub-families are recognise ...This family is known as Family B, the secretin-receptor family or family 2 of the G-protein-coupled receptors (GCPRs). They have been described in many animal species, but not in plants, fungi or prokaryotes. Three distinct sub-families are recognised. Subfamily B1 contains classical hormone receptors, such as receptors for secretin and glucagon, that are all involved in cAMP-mediated signalling pathways. Subfamily B2 contains receptors with long extracellular N-termini, such as the leukocyte cell-surface antigen CD97 (Swiss:P48960); calcium-independent receptors for latrotoxin (such as Swiss:O94910), and brain-specific angiogenesis inhibitors (such as Swiss:O14514) amongst others. Subfamily B3 includes Methuselah and other Drosophila proteins (e.g. Swiss:P83119). Other than the typical seven-transmembrane region, characteristic structural features include an amino-terminal extracellular domain involved in ligand binding, and an intracellular loop (IC3) required for specific G-protein coupling [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Guanine nucleotide-binding protein G(i) subunit alpha-1
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2
scFv16---
Glucagon
F [auth R]Glucagon receptor

InterPro: Protein Family Classification InterPro Database Homepage

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosP63096
PharosP62873
PharosP59768
PharosP01275
F [auth R]PharosP47871