6LQR

Cryo-EM structure of 90S small subunit preribosomes in transition states (State C)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
K [auth SM]SCOP2B SuperfamilyNucleic acid-binding proteins8052738 3000135 SCOP2B (2022-06-29)
L [auth SO]SCOP2B SuperfamilyS15/NS1 RNA-binding domain8052974 3001284 SCOP2B (2022-06-29)
L [auth SO]SCOP2B SuperfamilyHomeodomain-like8052973 3000001 SCOP2B (2022-06-29)
M [auth SP]SCOP2B SuperfamilyTranslational machinery components8095805 3000571 SCOP2B (2022-06-29)
N [auth SR]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8103366 3000100 SCOP2B (2022-06-29)
S [auth Sd]SCOP2B SuperfamilyNucleic acid-binding proteins8063430 3000135 SCOP2B (2022-06-29)
T [auth 3B]SCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases8063662 3000118 SCOP2B (2022-06-29)
U [auth 3C]SCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases8063662 3000118 SCOP2B (2022-06-29)
Y [auth 3G]SCOP2B SuperfamilyL30e-like8033484 3001739 SCOP2B (2022-06-29)
Z [auth 3H]SCOP2B SuperfamilyL30e-like8033484 3001739 SCOP2B (2022-06-29)
JA [auth B3]SCOP2B SuperfamilyUTPB complex component-like8061270 3002330 SCOP2B (2022-06-29)
D [auth SC]SCOP2B SuperfamilyRibosomal S3Ae-like8053211 3002166 SCOP2B (2022-06-29)
E [auth SF]SCOP2B SuperfamilyNucleic acid-binding proteins8052759 3000135 SCOP2B (2022-06-29)
E [auth SF]SCOP2B SuperfamilyAlpha-L RNA-binding motif8052758 3001473 SCOP2B (2022-06-29)
E [auth SF]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8052760 3000334 SCOP2B (2022-06-29)
AB [auth RE]SCOP2B SuperfamilyNucleotidyltransferase-like8053725 3000129 SCOP2B (2022-06-29)
AB [auth RE]SCOP2B SuperfamilyPAP/OAS1 substrate-binding domain-like8053728 3000941 SCOP2B (2022-06-29)
AB [auth RE]SCOP2B SuperfamilyPAP/Archaeal CCA-adding enzyme C-terminal domain-like8053730 3001147 SCOP2B (2022-06-29)
AB [auth RE]SCOP2B SuperfamilyNucleotidyltransferase-like8053726 3000129 SCOP2B (2022-06-29)
AB [auth RE]SCOP2B SuperfamilyPAP/OAS1 substrate-binding domain-like8053727 3000941 SCOP2B (2022-06-29)
AB [auth RE]SCOP2B SuperfamilyPAP/Archaeal CCA-adding enzyme C-terminal domain-like8053729 3001147 SCOP2B (2022-06-29)
BB [auth RF]SCOP2B SuperfamilyRRP7 C-terminal domain-like8053722 3002219 SCOP2B (2022-06-29)
BB [auth RF]SCOP2B SuperfamilyRNA-binding domain RBD8053724 3000110 SCOP2B (2022-06-29)
CB [auth RG]SCOP2B Superfamilyalpha/beta knot8037153 3001122 SCOP2B (2022-06-29)
DB [auth RH]SCOP2B Superfamilyalpha/beta knot8037153 3001122 SCOP2B (2022-06-29)
F [auth SG]SCOP2B SuperfamilyRibosomal protein S78065993 3000799 SCOP2B (2022-06-29)
G [auth SH]SCOP2B SuperfamilyGS N-terminal domain-like8053173 3000408 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
J [auth SK]PF00163,PF01479e6lqrSK1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
K [auth SM]PF00366,PF16205e6lqrSM1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366,PF16205ECOD (1.6)
L [auth SO]PF08069e6lqrSO1 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: PF08069ECOD (1.6)
L [auth SO]PF00312e6lqrSO2 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)
M [auth SP]PF00411e6lqrSP1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
N [auth SR]PF00380e6lqrSR1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF00380ECOD (1.6)
O [auth SX]PF00410e6lqrSX2 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: PF00410ECOD (1.6)
O [auth SX]PF00410e6lqrSX1 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: PF00410ECOD (1.6)
P [auth SY]PF00164e6lqrSY1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
Q [auth SZ]PF01282e6lqrSZ1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF01282ECOD (1.6)
R [auth Sc]PF01667e6lqrSc1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01667ECOD (1.6)
S [auth Sd]PF01200e6lqrSd1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF01200ECOD (1.6)
T [auth 3B]PF01269e6lqr3B1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: PF01269ECOD (1.6)
U [auth 3C]PF01269e6lqr3C1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: PF01269ECOD (1.6)
V [auth 3D]PF01798e6lqr3D1 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: Nop C-terminal domainF: PF01798ECOD (1.6)
V [auth 3D]PF01798e6lqr3D3 A: alpha complex topologyX: Nop N-terminal domain (From Topology)H: Nop N-terminal domain (From Topology)T: Nop N-terminal domainF: PF01798ECOD (1.6)
V [auth 3D]PF08156e6lqr3D2 A: mixed a+b and a/bX: Nop N-terminal domain (From Topology)H: Nop N-terminal domain (From Topology)T: Nop N-terminal domainF: PF08156ECOD (1.6)
X [auth 3F]PF00400e6lqr3F1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
Y [auth 3G]PF01248e6lqr3G1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
Z [auth 3H]PF01248e6lqr3H1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
AA [auth A4]F_UNCLASSIFIEDe6lqrA41 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: F_UNCLASSIFIEDECOD (1.6)
AA [auth A4]PF00400e6lqrA42 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
DA [auth A9]F_UNCLASSIFIEDe6lqrA91 A: alpha superhelicesX: Repetitive alpha hairpinsH: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 (From Topology)T: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13F: F_UNCLASSIFIEDECOD (1.6)
FA [auth AF]PF00400e6lqrAF1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: PF00400ECOD (1.6)
FA [auth AF]PF09384e6lqrAF2 A: alpha superhelicesX: Repetitive alpha hairpinsH: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 (From Topology)T: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13F: PF09384ECOD (1.6)
HA [auth B1]PF00400e6lqrB12 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
HA [auth B1]PF04003e6lqrB13 A: alpha superhelicesX: Repetitive alpha hairpinsH: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 (From Topology)T: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13F: PF04003ECOD (1.6)
IA [auth B2]PF00400e6lqrB23 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
IA [auth B2]PF04003e6lqrB21 A: alpha superhelicesX: Repetitive alpha hairpinsH: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 (From Topology)T: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13F: PF04003ECOD (1.6)
JA [auth B3]PF00400e6lqrB31 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
JA [auth B3]PF08625e6lqrB33 A: alpha superhelicesX: Repetitive alpha hairpinsH: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 (From Topology)T: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13F: PF08625ECOD (1.6)
LA [auth BE]PF00400e6lqrBE2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
LA [auth BE]PF12894e6lqrBE3 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF12894ECOD (1.6)
LA [auth BE]PF04192e6lqrBE1 A: alpha superhelicesX: Repetitive alpha hairpinsH: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 (From Topology)T: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13F: PF04192ECOD (1.6)
OA [auth 5C]PF00400,PF08149e6lqr5C1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: PF00400,PF08149ECOD (1.6)
D [auth SC]PF01015e6lqrSC1 A: beta barrelsX: Ribosomal protein L25-likeH: 40S ribosomal protein S3A N-terminal domain (From Topology)T: 40S ribosomal protein S3A N-terminal domainF: PF01015ECOD (1.6)
D [auth SC]PF01015e6lqrSC2 A: a+b two layersX: T-foldH: 40S ribosomal protein S3A C-terminal domain (From Topology)T: 40S ribosomal protein S3A C-terminal domainF: PF01015ECOD (1.6)
RA [auth 5F]PF00163,PF01479e6lqr5F1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
SA [auth 5G]PF04427e6lqr5G1 A: a/b three-layered sandwichesX: Anticodon-binding domain of Class II aaRS (From Topology)H: Anticodon-binding domain of Class II aaRS (From Topology)T: Anticodon-binding domain of Class II aaRSF: PF04427ECOD (1.6)
XA [auth RA]F_UNCLASSIFIEDe6lqrRA1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: F_UNCLASSIFIEDECOD (1.6)
E [auth SF]PF00900e6lqrSF2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00900ECOD (1.6)
E [auth SF]PF00467,PF16121e6lqrSF3 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF16121ECOD (1.6)
E [auth SF]PF00900,PF01479,PF08071e6lqrSF1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00900,PF01479,PF08071ECOD (1.6)
ZA [auth RD]F_UNCLASSIFIEDe6lqrRD1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: F_UNCLASSIFIEDECOD (1.6)
AB [auth RE]PF17403e6lqrRE1 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: PAP/OAS1 substrate-binding domainF: PF17403ECOD (1.6)
AB [auth RE]PF17406e6lqrRE4 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: PAP/OAS1 substrate-binding domainF: PF17406ECOD (1.6)
AB [auth RE]PF17404e6lqrRE6 A: a+b two layersX: Alpha-beta plaitsH: PAP/Archaeal CCA-adding enzyme, C-terminal domain (From Topology)T: PAP/Archaeal CCA-adding enzyme, C-terminal domainF: PF17404ECOD (1.6)
AB [auth RE]PF17407e6lqrRE2 A: a+b two layersX: Alpha-beta plaitsH: PAP/Archaeal CCA-adding enzyme, C-terminal domain (From Topology)T: PAP/Archaeal CCA-adding enzyme, C-terminal domainF: PF17407ECOD (1.6)
AB [auth RE]PF03813e6lqrRE3 A: a+b three layersX: Nucleotidyltransferase-likeH: Nucleotidyltransferase (From Topology)T: NucleotidyltransferaseF: PF03813ECOD (1.6)
AB [auth RE]PF17405e6lqrRE5 A: a+b three layersX: Nucleotidyltransferase-likeH: Nucleotidyltransferase (From Topology)T: NucleotidyltransferaseF: PF17405ECOD (1.6)
BB [auth RF]PF12923,PF17799e6lqrRF1 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: PF12923,PF17799ECOD (1.6)
CB [auth RG]PF03587e6lqrRG1 A: a/b three-layered sandwichesX: alpha/beta knot (From Topology)H: alpha/beta knot (From Topology)T: alpha/beta knotF: PF03587ECOD (1.6)
DB [auth RH]PF03587e6lqrRH1 A: a/b three-layered sandwichesX: alpha/beta knot (From Topology)H: alpha/beta knot (From Topology)T: alpha/beta knotF: PF03587ECOD (1.6)
FB [auth RK]PF01137e6lqrRK2 A: a+b two layersX: IF3-likeH: EPT/RTPC-like (From Topology)T: EPT/RTPC-likeF: PF01137ECOD (1.6)
FB [auth RK]PF05189e6lqrRK1 A: a+b three layersX: Thioredoxin-likeH: RNA 3'-terminal phosphate cyclase, RPTC, insert domain (From Topology)T: RNA 3'-terminal phosphate cyclase, RPTC, insert domainF: PF05189ECOD (1.6)
GB [auth RL]PF13725e6lqrRL4 A: alpha arraysX: HTHH: HTHT: tri-helicalF: PF13725ECOD (1.6)
GB [auth RL]PF13718,PF13725e6lqrRL1 A: a+b three layersX: Nat/IvyH: Acyl-CoA N-acyltransferases (Nat) (From Topology)T: Acyl-CoA N-acyltransferases (Nat)F: PF13718,PF13725ECOD (1.6)
GB [auth RL]PF05127e6lqrRL2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF05127ECOD (1.6)
GB [auth RL]PF08351e6lqrRL3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF08351ECOD (1.6)
HB [auth RM]PF13725e6lqrRM4 A: alpha arraysX: HTHH: HTHT: tri-helicalF: PF13725ECOD (1.6)
HB [auth RM]PF13718,PF13725e6lqrRM1 A: a+b three layersX: Nat/IvyH: Acyl-CoA N-acyltransferases (Nat) (From Topology)T: Acyl-CoA N-acyltransferases (Nat)F: PF13718,PF13725ECOD (1.6)
HB [auth RM]PF05127e6lqrRM2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF05127ECOD (1.6)
HB [auth RM]PF08351e6lqrRM3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF08351ECOD (1.6)
F [auth SG]PF00177e6lqrSG1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: PF00177ECOD (1.6)
MB [auth RS]PF05291e6lqrRS1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF05291ECOD (1.6)
NB [auth RT]PF17903e6lqrRT1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Eukaryotic type KH-domain (KH-domain type I)F: PF17903ECOD (1.6)
NB [auth RT]PF22891e6lqrRT2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Eukaryotic type KH-domain (KH-domain type I)F: PF22891ECOD (1.6)
G [auth SH]PF01092e6lqrSH1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: PF01092ECOD (1.6)
H [auth SI]PF01251e6lqrSI1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: PF01251ECOD (1.6)
I [auth SJ]PF01201e6lqrSJ1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF01201ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
J [auth SK]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
K [auth SM]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
K [auth SM]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
L [auth SO]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
M [auth SP]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
N [auth SR]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
O [auth SX]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
Q [auth SZ]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
T [auth 3B],
U [auth 3C]
PF01269Fibrillarin (Fibrillarin)Fibrillarin- Domain
V [auth 3D]PF08156NOP5NT (NUC127) domain (NOP5NT)NOP5NT (NUC127) domainThis N terminal domain is found in RNA-binding proteins of the NOP5 family [1].Domain
V [auth 3D]PF01798snoRNA binding domain, fibrillarin (Nop)snoRNA binding domain, fibrillarin- Family
W [auth 3E]PF08156NOP5NT (NUC127) domain (NOP5NT)NOP5NT (NUC127) domainThis N terminal domain is found in RNA-binding proteins of the NOP5 family [1].Domain
W [auth 3E]PF01798snoRNA binding domain, fibrillarin (Nop)snoRNA binding domain, fibrillarin- Family
X [auth 3F]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
Y [auth 3G],
Z [auth 3H]
PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
AA [auth A4]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
BA [auth A5]PF04003Dip2/Utp12 Family (Utp12)Dip2/Utp12 Family- Family
EA [auth AE]PF08146BP28CT (NUC211) domain (BP28CT)BP28CT (NUC211) domainThis C terminal domain is found in BAP28-like nucleolar proteins [1].Domain
EA [auth AE]PF12397U3 small nucleolar RNA-associated protein 10 (U3snoRNP10)U3 small nucleolar RNA-associated protein 10- Family
FA [auth AF]PF09384UTP15 C terminal (UTP15_C)UTP15 C terminal- Family
FA [auth AF]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
GA [auth AG]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
HA [auth B1]PF04003Dip2/Utp12 Family (Utp12)Dip2/Utp12 Family- Family
HA [auth B1]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
IA [auth B2]PF04003Dip2/Utp12 Family (Utp12)Dip2/Utp12 Family- Family
IA [auth B2]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
JA [auth B3]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
JA [auth B3]PF08625Utp13 specific WD40 associated domain (Utp13)Utp13 specific WD40 associated domainUtp13 is a component of the five protein Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome [1]. Pwp2 is capable o ...Utp13 is a component of the five protein Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome [1]. Pwp2 is capable of interacting directly with the 35 S pre-rRNA 5' end [1].
Domain
KA [auth B8]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
LA [auth BE]PF04192Utp21 specific WD40 associated putative domain (Utp21)Utp21 specific WD40 associated putative domainUtp21 is a subunit of U3 snoRNP, which is essential for synthesis of 18S rRNA.Domain
LA [auth BE]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
MA [auth B6]PF08640U3 small nucleolar RNA-associated protein 6 (U3_assoc_6)U3 small nucleolar RNA-associated protein 6- Family
OA [auth 5C]PF08149BING4CT (NUC141) domain (BING4CT)BING4CT (NUC141) domainThis C terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [1].Domain
OA [auth 5C]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
D [auth SC]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
D [auth SC]PF01015Ribosomal S3Ae family (Ribosomal_S3Ae)Ribosomal S3Ae family- Family
PA [auth 5D]PF03998Utp11 protein (Utp11)Utp11 protein- Family
RA [auth 5F]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
RA [auth 5F]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
SA [auth 5G]PF04427Brix domain (Brix)Brix domain- Domain
UA [auth 5I]PF04158Sof1-like domain (Sof1)Sof1-like domain- Family
UA [auth 5I]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
WA [auth 5K]PF04900Fcf1 (Fcf1)Fcf1- Family
E [auth SF]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
E [auth SF]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
E [auth SF]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
E [auth SF]PF00467KOW motif (KOW)KOW motif- Family
ZA [auth RD]PF00575S1 RNA binding domain (S1)S1 RNA binding domainThe S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure.Domain
AB [auth RE]PF03813Nrap protein domain 1 (Nrap)Nrap protein domain 1Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1]. This domain has a nucleotidyltransferase structure.
Domain
AB [auth RE]PF17403Nrap protein PAP/OAS-like domain (Nrap_D2)Nrap protein PAP/OAS-like domainMembers of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
AB [auth RE]PF17406Nrap protein PAP/OAS1-like domain 5 (Nrap_D5)Nrap protein PAP/OAS1-like domain 5Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
AB [auth RE]PF17407Nrap protein domain 6 (Nrap_D6)Nrap protein domain 6Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
AB [auth RE]PF17404Nrap protein domain 3 (Nrap_D3)Nrap protein domain 3Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
AB [auth RE]PF17405Nrap protein nucleotidyltransferase domain 4 (Nrap_D4)Nrap protein nucleotidyltransferase domain 4Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
BB [auth RF]PF17799Rrp7 RRM-like N-terminal domain (RRM_Rrp7)Rrp7 RRM-like N-terminal domainThis domain corresponds to the N-terminal RNA-binding domain found in the Rrp7 protein. It has an RRM-like fold with a circular permutation [1].Domain
BB [auth RF]PF12923Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain (RRP7)Ribosomal RNA-processing protein 7 (RRP7) C-terminal domainRRP7 is an essential protein in yeast that is involved in pre-rRNA processing and ribosome assembly [1]. It is speculated to be required for correct assembly of rpS27 into the pre-ribosomal particle [1-2].Domain
CB [auth RG],
DB [auth RH]
PF03587EMG1/NEP1 methyltransferase (EMG1)EMG1/NEP1 methyltransferase- Family
EB [auth RJ]PF08142AARP2CN (NUC121) domain (AARP2CN)AARP2CN (NUC121) domainThis domain is the central domain of AARP2. It is weakly similar to the GTP-binding domain of elongation factor TU [1].Domain
EB [auth RJ]PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2].Domain
FB [auth RK]PF05189RNA 3'-terminal phosphate cyclase (RTC), insert domain (RTC_insert)RNA 3'-terminal phosphate cyclase (RTC), insert domainRNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation o ...RNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation of the covalent AMP-cyclase intermediate [1]. The structure of RTC demonstrates that RTCs are comprised two domain. The larger domain contains an insert domain of approximately 100 amino acids [1].
Domain
FB [auth RK]PF01137RNA 3'-terminal phosphate cyclase (RTC)RNA 3'-terminal phosphate cyclaseRNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation o ...RNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation of the covalent AMP-cyclase intermediate [1]. The structure of RTC demonstrates that RTCs are comprised two domain. The larger domain contains an insert domain of approximately 100 amino acids [1].
Domain
GB [auth RL],
HB [auth RM]
PF13725Possible tRNA binding domain (tRNA_bind_2)Possible tRNA binding domain- Family
GB [auth RL],
HB [auth RM]
PF08351tRNA(Met) cytidine acetyltransferase TmcA, N-terminal (TmcA_N)tRNA(Met) cytidine acetyltransferase TmcA, N-terminal- Family
GB [auth RL],
HB [auth RM]
PF13718GNAT acetyltransferase 2 (GNAT_acetyltr_2)GNAT acetyltransferase 2- Family
GB [auth RL],
HB [auth RM]
PF05127Helicase (Helicase_RecD)HelicaseThis domain contains a P-loop (Walker A) motif, suggesting that it has ATPase activity, and a Walker B motif. In tRNA(Met) cytidine acetyltransferase (TmcA) it may function as an RNA helicase motor (driven by ATP hydrolysis) which delivers the wobble ...This domain contains a P-loop (Walker A) motif, suggesting that it has ATPase activity, and a Walker B motif. In tRNA(Met) cytidine acetyltransferase (TmcA) it may function as an RNA helicase motor (driven by ATP hydrolysis) which delivers the wobble base to the active centre of the GCN5-related N-acetyltransferase (GNAT) domain [1]. It is found in the bacterial exodeoxyribonuclease V alpha chain (RecD), which has 5'-3' helicase activity. It is structurally similar to the motor domain 1A in other SF1 helicases [2].
Domain
IB [auth RN]PF04147Nop14-like family (Nop14)Nop14-like family- Family
JB [auth RO]PF03914CBF/Mak21 family (CBF)CBF/Mak21 family- Repeat
KB [auth RP]PF07539U3 small nucleolar RNA-associated protein 20, N-terminal (UTP20_N)U3 small nucleolar RNA-associated protein 20, N-terminalThis domain is found towards the N-terminal of eukaryotic proteins including U3 small nucleolar RNA-associated protein 20 (UTP20) from yeast and the homologue from human, also known as DRIM (Down-Regulated In Metastasis) (Swiss:O75691), which is diff ...This domain is found towards the N-terminal of eukaryotic proteins including U3 small nucleolar RNA-associated protein 20 (UTP20) from yeast and the homologue from human, also known as DRIM (Down-Regulated In Metastasis) (Swiss:O75691), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells [1]. Proteins of this entry are involved in processing of non-coding RNA as components of of the small-subunit (SSU) processome; SSU processome is involved in the biogenesis of the 18S rRNA [2,3]. UTP20 is a huge alpha-solenoid structure that functions as a scaffold [4,5].
Domain
F [auth SG]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
G [auth SH]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
I [auth SJ]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 3A]U3 snoRNA---
J [auth SK]40S ribosomal protein S9-A
K [auth SM]40S ribosomal protein S11-A
L [auth SO]40S ribosomal protein S13
M [auth SP]40S ribosomal protein S14-A
N [auth SR]40S ribosomal protein S16-A
O [auth SX]40S ribosomal protein S22-B
P [auth SY]40S ribosomal protein S23-A
Q [auth SZ]40S ribosomal protein S24-A
R [auth Sc]40S ribosomal protein S27-A
S [auth Sd]40S ribosomal protein S28-A
B [auth 5A]5' ETS---
T [auth 3B],
U [auth 3C]
rRNA 2'-O-methyltransferase fibrillarin
V [auth 3D]Nucleolar protein 56
W [auth 3E]Nucleolar protein 58
X [auth 3F]Ribosomal RNA-processing protein 9
Y [auth 3G],
Z [auth 3H]
13 kDa ribonucleoprotein-associated protein
AA [auth A4]U3 small nucleolar RNA-associated protein 4
BA [auth A5]U3 small nucleolar RNA-associated protein 5-
CA [auth A8]U3 small nucleolar RNA-associated protein 8
DA [auth A9]U3 small nucleolar RNA-associated protein 9
EA [auth AE]U3 small nucleolar RNA-associated protein 10
C [auth SA]18S pre-rRNA---
FA [auth AF]U3 small nucleolar RNA-associated protein 15
GA [auth AG]NET1-associated nuclear protein 1
HA [auth B1]Periodic tryptophan protein 2
IA [auth B2]U3 small nucleolar RNA-associated protein 12
JA [auth B3]U3 small nucleolar RNA-associated protein 13
KA [auth B8]U3 small nucleolar RNA-associated protein 18-
LA [auth BE]U3 small nucleolar RNA-associated protein 21-
MA [auth B6]U3 small nucleolar RNA-associated protein 6
NA [auth 5B]Bud site selection protein 21
OA [auth 5C]U3 small nucleolar RNA-associated protein 7-
D [auth SC]40S ribosomal protein S1-A
PA [auth 5D]U3 small nucleolar RNA-associated protein 11-
QA [auth 5E]U3 small nucleolar RNA-associated protein MPP10
RA [auth 5F]U3 small nucleolar ribonucleoprotein protein IMP3
SA [auth 5G]U3 small nucleolar ribonucleoprotein protein IMP4
TA [auth 5H]Something about silencing protein 10
UA [auth 5I]Protein SOF1
VA [auth 5J]rRNA-processing protein FCF2
WA [auth 5K]rRNA-processing protein FCF1
XA [auth RA]Ribosome biogenesis protein ENP2-
YA [auth RB]U3 small nucleolar ribonucleoprotein protein LCP5-
E [auth SF]40S ribosomal protein S4-A
ZA [auth RD]rRNA biogenesis protein RRP5
AB [auth RE]U3 small nucleolar RNA-associated protein 22
BB [auth RF]Ribosomal RNA-processing protein 7
CB [auth RG],
DB [auth RH]
Ribosomal RNA small subunit methyltransferase NEP1
EB [auth RJ]Ribosome biogenesis protein BMS1
FB [auth RK]RNA 3'-terminal phosphate cyclase-like protein
GB [auth RL],
HB [auth RM]
RNA cytidine acetyltransferase
IB [auth RN]Nucleolar complex protein 14
JB [auth RO]Nucleolar complex protein 4-
KB [auth RP]U3 small nucleolar RNA-associated protein 20
F [auth SG]40S ribosomal protein S5
LB [auth RQ]U3 small nucleolar RNA-associated protein 14
MB [auth RS]Essential nuclear protein 1
NB [auth RT]Pno1---
OB [auth RY]Protein BFR2-
PB [auth X1]Unassigned helices---
G [auth SH]40S ribosomal protein S6-A
H [auth SI]40S ribosomal protein S7-A
I [auth SJ]40S ribosomal protein S8-A

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
J [auth SK]IPR002942RNA-binding S4 domainDomain
J [auth SK]IPR022801Small ribosomal subunit protein uS4Family
J [auth SK]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
J [auth SK]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
J [auth SK]IPR005710Small ribosomal subunit protein uS4, eukaryotic/archaealFamily
J [auth SK]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
K [auth SM]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
K [auth SM]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
K [auth SM]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
K [auth SM]IPR000266Small ribosomal subunit protein uS17Family
K [auth SM]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
L [auth SO]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
L [auth SO]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
L [auth SO]IPR000589Small ribosomal subunit protein uS15Family
L [auth SO]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
M [auth SP]IPR001971Small ribosomal subunit protein uS11Family
M [auth SP]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
M [auth SP]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
N [auth SR]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
N [auth SR]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
N [auth SR]IPR000754Small ribosomal subunit protein uS9Family
N [auth SR]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
O [auth SX]IPR000630Small ribosomal subunit protein uS8Family
O [auth SX]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
O [auth SX]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
P [auth SY]IPR006032Small ribosomal subunit protein uS12Family
P [auth SY]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
P [auth SY]IPR005680Small ribosomal subunit protein uS12, eukaryotic/archaealFamily
Q [auth SZ]IPR001976Small ribosomal subunit protein eS24Family
Q [auth SZ]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
Q [auth SZ]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
R [auth Sc]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
R [auth Sc]IPR000592Small ribosomal subunit protein eS27Family
R [auth Sc]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
S [auth Sd]IPR028626Ribosomal protein eS28 conserved siteConserved Site
S [auth Sd]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
S [auth Sd]IPR000289Small ribosomal subunit protein eS28Family
T [auth 3B],
U [auth 3C]
IPR000692rRNA 2'-O-methyltransferase fibrillarin-likeFamily
T [auth 3B],
U [auth 3C]
IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
T [auth 3B],
U [auth 3C]
IPR020813Fibrillarin, conserved siteConserved Site
V [auth 3D]IPR042239Nop, C-terminal domainHomologous Superfamily
V [auth 3D]IPR012974Nucleolar protein 58/56, N-terminalDomain
V [auth 3D]IPR002687Nop domainDomain
V [auth 3D]IPR012976NOSICDomain
V [auth 3D]IPR036070Nop domain superfamilyHomologous Superfamily
V [auth 3D]IPR045056Nucleolar protein Nop56/Nop58Family
W [auth 3E]IPR042239Nop, C-terminal domainHomologous Superfamily
W [auth 3E]IPR012974Nucleolar protein 58/56, N-terminalDomain
W [auth 3E]IPR002687Nop domainDomain
W [auth 3E]IPR012976NOSICDomain
W [auth 3E]IPR036070Nop domain superfamilyHomologous Superfamily
W [auth 3E]IPR045056Nucleolar protein Nop56/Nop58Family
X [auth 3F]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
X [auth 3F]IPR039241Ribosomal RNA-processing protein Rrp9-likeFamily
X [auth 3F]IPR001680WD40 repeatRepeat
X [auth 3F]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
Y [auth 3G],
Z [auth 3H]
IPR002415H/ACA ribonucleoprotein complex, subunit Nhp2-likeFamily
Y [auth 3G],
Z [auth 3H]
IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
Y [auth 3G],
Z [auth 3H]
IPR018492Ribosomal protein eL8/Nhp2 familyFamily
Y [auth 3G],
Z [auth 3H]
IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
Y [auth 3G],
Z [auth 3H]
IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
AA [auth A4]IPR001680WD40 repeatRepeat
AA [auth A4]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
AA [auth A4]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
BA [auth A5]IPR007148Small-subunit processome, Utp12Domain
BA [auth A5]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
BA [auth A5]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
CA [auth A8]IPR018843Utp8, beta-propellerDomain
DA [auth A9]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
EA [auth AE]IPR016024Armadillo-type foldHomologous Superfamily
EA [auth AE]IPR040191U3 small nucleolar RNA-associated protein 10Family
EA [auth AE]IPR021133HEAT, type 2Repeat
EA [auth AE]IPR011989Armadillo-like helicalHomologous Superfamily
EA [auth AE]IPR022125U3 small nucleolar RNA-associated protein 10, N-terminalDomain
EA [auth AE]IPR012954BP28, C-terminal domainDomain
FA [auth AF]IPR019775WD40 repeat, conserved siteConserved Site
FA [auth AF]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
FA [auth AF]IPR001680WD40 repeatRepeat
FA [auth AF]IPR018983U3 small nucleolar RNA-associated protein 15, C-terminalDomain
FA [auth AF]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
GA [auth AG]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
GA [auth AG]IPR001680WD40 repeatRepeat
GA [auth AG]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
HA [auth B1]IPR024977Anaphase-promoting complex subunit 4-like, WD40 domainDomain
HA [auth B1]IPR019775WD40 repeat, conserved siteConserved Site
HA [auth B1]IPR007148Small-subunit processome, Utp12Domain
HA [auth B1]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
HA [auth B1]IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
HA [auth B1]IPR001680WD40 repeatRepeat
HA [auth B1]IPR020472G-protein beta WD-40 repeatRepeat
HA [auth B1]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
HA [auth B1]IPR027145Periodic tryptophan protein 2Family
IA [auth B2]IPR019775WD40 repeat, conserved siteConserved Site
IA [auth B2]IPR007148Small-subunit processome, Utp12Domain
IA [auth B2]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IA [auth B2]IPR001680WD40 repeatRepeat
IA [auth B2]IPR020472G-protein beta WD-40 repeatRepeat
IA [auth B2]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
JA [auth B3]IPR019775WD40 repeat, conserved siteConserved Site
JA [auth B3]IPR013934U3 small nucleolar RNA-associated protein 13, C-terminalDomain
JA [auth B3]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
JA [auth B3]IPR001680WD40 repeatRepeat
JA [auth B3]IPR020472G-protein beta WD-40 repeatRepeat
JA [auth B3]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
KA [auth B8]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
KA [auth B8]IPR001680WD40 repeatRepeat
KA [auth B8]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
KA [auth B8]IPR045161U3 small nucleolar RNA-associated protein 18Family
LA [auth BE]IPR007319Small-subunit processome, Utp21Domain
LA [auth BE]IPR024977Anaphase-promoting complex subunit 4-like, WD40 domainDomain
LA [auth BE]IPR019775WD40 repeat, conserved siteConserved Site
LA [auth BE]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
LA [auth BE]IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
LA [auth BE]IPR001680WD40 repeatRepeat
LA [auth BE]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
MA [auth B6]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
MA [auth B6]IPR003107HAT (Half-A-TPR) repeatRepeat
MA [auth B6]IPR013949U3 small nucleolar RNA-associated protein 6Family
NA [auth 5B]IPR013268U3 small nucleolar RNA-associated protein 16Family
OA [auth 5C]IPR019775WD40 repeat, conserved siteConserved Site
OA [auth 5C]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
OA [auth 5C]IPR012952BING4, C-terminal domainDomain
OA [auth 5C]IPR001680WD40 repeatRepeat
OA [auth 5C]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
OA [auth 5C]IPR040315WD repeat-containing protein WDR46/Utp7Family
D [auth SC]IPR001593Small ribosomal subunit protein eS1Family
D [auth SC]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
D [auth SC]IPR027500Small ribosomal subunit protein eS1, eukaryotesFamily
PA [auth 5D]IPR007144Small-subunit processome, Utp11Family
QA [auth 5E]IPR012173U3 small nucleolar ribonucleoprotein complex, subunit Mpp10Family
RA [auth 5F]IPR002942RNA-binding S4 domainDomain
RA [auth 5F]IPR022801Small ribosomal subunit protein uS4Family
RA [auth 5F]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
RA [auth 5F]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
SA [auth 5G]IPR044281U3 snoRNP protein/Ribosome production factor 1Family
SA [auth 5G]IPR007109Brix domainDomain
TA [auth 5H]IPR018972Sas10 C-terminal domainDomain
TA [auth 5H]IPR007146Sas10/Utp3/C1DFamily
UA [auth 5I]IPR001680WD40 repeatRepeat
UA [auth 5I]IPR007287Sof1-like proteinDomain
UA [auth 5I]IPR020472G-protein beta WD-40 repeatRepeat
UA [auth 5I]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
UA [auth 5I]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
VA [auth 5J]IPR039883Fcf2/DNTTIP2Family
VA [auth 5J]IPR014810Fcf2 pre-rRNA processing, C-terminalDomain
WA [auth 5K]IPR002716PIN domainDomain
WA [auth 5K]IPR029060PIN-like domain superfamilyHomologous Superfamily
WA [auth 5K]IPR006984rRNA-processing protein Fcf1/Utp23Family
WA [auth 5K]IPR037503rRNA-processing protein Fcf1, PIN domainDomain
XA [auth RA]IPR001680WD40 repeatRepeat
XA [auth RA]IPR040382Nucleolar protein 10/Enp2Family
XA [auth RA]IPR012580NUC153Domain
XA [auth RA]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
XA [auth RA]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
YA [auth RB]IPR007146Sas10/Utp3/C1DFamily
E [auth SF]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
E [auth SF]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
E [auth SF]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
E [auth SF]IPR002942RNA-binding S4 domainDomain
E [auth SF]IPR013845Small ribosomal subunit protein eS4, central regionDomain
E [auth SF]IPR000876Small ribosomal subunit protein eS4Family
E [auth SF]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
E [auth SF]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
E [auth SF]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
E [auth SF]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
E [auth SF]IPR005824KOWDomain
ZA [auth RD]IPR048059rRNA biogenesis protein RRP5, S1 domain, first repeatDomain
ZA [auth RD]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
ZA [auth RD]IPR003029S1 domainDomain
ZA [auth RD]IPR048058rRNA biogenesis protein RRP5, S1 domain, eleventh repeatDomain
ZA [auth RD]IPR003107HAT (Half-A-TPR) repeatRepeat
ZA [auth RD]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
ZA [auth RD]IPR045209rRNA biogenesis protein Rrp5Family
AB [auth RE]IPR035367Nrap protein, domain 2Domain
AB [auth RE]IPR035368Nrap protein, domain 3Domain
AB [auth RE]IPR035370Nrap protein, domain 5Domain
AB [auth RE]IPR005554NOL6/Upt22Family
AB [auth RE]IPR035369Nrap protein, domain 4Domain
AB [auth RE]IPR035082Nrap protein domain 1Domain
AB [auth RE]IPR035371Nrap protein, domain 6Domain
BB [auth RF]IPR040446Ribosomal RNA-processing protein 7Family
BB [auth RF]IPR040447Rrp7, RRM-like N-terminal domainDomain
BB [auth RF]IPR024326Ribosomal RNA-processing protein 7, C-terminal domainDomain
CB [auth RG],
DB [auth RH]
IPR029026tRNA (guanine-N1-)-methyltransferase, N-terminalHomologous Superfamily
CB [auth RG],
DB [auth RH]
IPR005304Ribosomal biogenesis, methyltransferase, EMG1/NEP1Family
CB [auth RG],
DB [auth RH]
IPR029028Alpha/beta knot methyltransferasesHomologous Superfamily
EB [auth RJ]IPR007034Ribosome biogenesis protein BMS1/TSR1, C-terminalDomain
EB [auth RJ]IPR039761Ribosome biogenesis protein Bms1/Tsr1Family
EB [auth RJ]IPR003959ATPase, AAA-type, coreDomain
EB [auth RJ]IPR012948AARP2CNDomain
EB [auth RJ]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
EB [auth RJ]IPR030387Bms1/Tsr1-type G domainDomain
EB [auth RJ]IPR037875Ribosome biogenesis protein Bms1, N-terminalDomain
FB [auth RK]IPR013792RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/betaHomologous Superfamily
FB [auth RK]IPR023797RNA 3'-terminal phosphate cyclase domainDomain
FB [auth RK]IPR000228RNA 3'-terminal phosphate cyclaseFamily
FB [auth RK]IPR020719RNA 3'-terminal phosphate cyclase-like, conserved siteConserved Site
FB [auth RK]IPR037136RNA 3'-terminal phosphate cyclase domain superfamilyHomologous Superfamily
FB [auth RK]IPR016443RNA 3'-terminal phosphate cyclase type 2Family
FB [auth RK]IPR013791RNA 3'-terminal phosphate cyclase, insert domainDomain
FB [auth RK]IPR036553RNA 3'-terminal phosphate cyclase, insert domain superfamilyHomologous Superfamily
GB [auth RL],
HB [auth RM]
IPR027992Possible tRNA binding domainDomain
GB [auth RL],
HB [auth RM]
IPR032672TmcA/NAT10/Kre33Family
GB [auth RL],
HB [auth RM]
IPR013562tRNA(Met) cytidine acetyltransferase TmcA, N-terminalDomain
GB [auth RL],
HB [auth RM]
IPR033688RNA cytidine acetyltransferase NAT10Family
GB [auth RL],
HB [auth RM]
IPR000182GNAT domainDomain
GB [auth RL],
HB [auth RM]
IPR007807Helicase domainDomain
GB [auth RL],
HB [auth RM]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IB [auth RN]IPR007276Nucleolar protein 14Family
JB [auth RO]IPR027193Nucleolar complex protein 4Family
JB [auth RO]IPR005612CCAAT-binding factorDomain
KB [auth RP]IPR016024Armadillo-type foldHomologous Superfamily
KB [auth RP]IPR011430U3 small nucleolar RNA-associated protein 20, N-terminalDomain
KB [auth RP]IPR011989Armadillo-like helicalHomologous Superfamily
KB [auth RP]IPR046523U3 small nucleolar RNA-associated protein 20, C-terminalDomain
F [auth SG]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
F [auth SG]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
F [auth SG]IPR000235Small ribosomal subunit protein uS7Family
F [auth SG]IPR023798Small ribosomal subunit protein uS7 domainDomain
F [auth SG]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
LB [auth RQ]IPR006709Small-subunit processome, Utp14Family
MB [auth RS]IPR007955BystinFamily
OB [auth RY]IPR012617Apoptosis-antagonizing transcription factor, C-terminalDomain
OB [auth RY]IPR025160AATF leucine zipper-containing domainDomain
OB [auth RY]IPR039223Protein AATF/Bfr2Family
G [auth SH]IPR014401Small ribosomal subunit protein eS6-likeFamily
G [auth SH]IPR001377Small ribosomal subunit protein eS6Family
G [auth SH]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
H [auth SI]IPR000554Small ribosomal subunit protein eS7Family
H [auth SI]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
I [auth SJ]IPR001047Small ribosomal subunit protein eS8Family
I [auth SJ]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotesHomologous Superfamily
I [auth SJ]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
I [auth SJ]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site