6MDM | pdb_00006mdm

The 20S supercomplex engaging the SNAP-25 N-terminus (class 1)

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
K [auth L]SCOP2B SuperfamilyTPR-like 8080089 3001345 SCOP2B (2022-06-29)
J [auth K]SCOP2B SuperfamilyTPR-like 8080089 3001345 SCOP2B (2022-06-29)
I [auth J]SCOP2B SuperfamilySNARE fusion complex 8043664 3001549 SCOP2B (2022-06-29)
H [auth I]SCOP2B SuperfamilySNARE fusion complex 8043665 3001549 SCOP2B (2022-06-29)
G [auth H]SCOP2B SuperfamilySNARE fusion complex 8043667 3001549 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRecA-like P-loop NTPases 8044318 3002019 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyRecA-like P-loop NTPases 8044318 3002019 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyRecA-like P-loop NTPases 8044318 3002019 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyADC-like 8042527 3001132 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyCdc48 domain 2-like 8034899 3000725 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyRecA-like P-loop NTPases 8044318 3002019 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCdc48 domain 2-like 8034899 3000725 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyADC-like 8042527 3001132 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyADC-like 8042527 3001132 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyRecA-like P-loop NTPases 8044318 3002019 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyCdc48 domain 2-like 8034899 3000725 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyRecA-like P-loop NTPases 8044318 3002019 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyCdc48 domain 2-like 8034899 3000725 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyADC-like 8042527 3001132 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
K [auth L]Anoctamine6mdmL1 A: alpha bundlesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (develop294)
J [auth K]Amidohydro_2e6mdmK1 A: alpha bundlesX: PriB N-terminal domain-likeH: ADP-ribosylationT: ADP-ribosylationF: Amidohydro_2ECOD (develop294)
I [auth J]Amidohydro_2e6mdmJ1 A: alpha bundlesX: PriB N-terminal domain-likeH: ADP-ribosylationT: ADP-ribosylationF: Amidohydro_2ECOD (develop294)
H [auth I]Syntaxine6mdmI01 A: alpha bundlesX: Rossmann-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: SyntaxinECOD (develop294)
FAnoctamine6mdmF1 A: alpha bundlesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (develop294)
EAnoctamine6mdmE1 A: alpha bundlesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (develop294)
DAnoctamine6mdmD1 A: alpha bundlesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (develop294)
CAnoctamine6mdmC1 A: alpha bundlesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (develop294)
BAnoctamine6mdmB1 A: alpha bundlesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (develop294)
AAmidohydro_2e6mdmA1 A: alpha bundlesX: PriB N-terminal domain-likeH: ADP-ribosylationT: ADP-ribosylationF: Amidohydro_2ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
I [auth J]PF00957Synaptobrevin (Synaptobrevin)SynaptobrevinThe entry represents the entire v-SNARE coiled-coil homology domain. The process of vesicular membrane fusion in eukaryotic cells depends on a conserved fusion machinery called SNARE (soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein ...The entry represents the entire v-SNARE coiled-coil homology domain. The process of vesicular membrane fusion in eukaryotic cells depends on a conserved fusion machinery called SNARE (soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptors). In the process of vesicle docking, proteins present on the vesicle (v-SNARE) have to bind to their counterpart on the target membrane (t-SNARE) to form a core complex that can then recruit the soluble proteins NSF and SNAP This so called fusion complex can then disassemble after ATP hydrolysis mediated by the ATPase NSF in a process that leads to membrane fusion and the release of the vesicle contents. v-SNAREs include proteins homologous to synaptobrevi [1, 2, 3].
Domain
H [auth I]PF05739SNARE domain (SNARE)SNARE domainMost if not all vesicular membrane fusion events in eukaryotic cells are believed to be mediated by a conserved fusion machinery, the SNARE [soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptors] machinery. The SNARE dom ...Most if not all vesicular membrane fusion events in eukaryotic cells are believed to be mediated by a conserved fusion machinery, the SNARE [soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptors] machinery. The SNARE domain is thought to act as a protein-protein interaction module in the assembly of a SNARE protein complex. It is composed of about 70 amino acids arranged in an alpha-helical structure [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
J [auth K],
K [auth L]		Alpha-soluble NSF attachment protein
I [auth J]Vesicle-associated membrane protein 2
H [auth I]Syntaxin-1A
G [auth H]Synaptosomal-associated protein 25
A, B, C, D, E
Vesicle-fusing ATPase

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
J [auth K],
K [auth L]		IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
J [auth K],
K [auth L]		IPR000744NSF attachment proteinFamily
I [auth J]IPR016444Synaptobrevin/Vesicle-associated membrane proteinFamily
I [auth J]IPR042855v-SNARE, coiled-coil homology domainDomain
I [auth J]IPR001388Synaptobrevin-likeFamily
H [auth I]IPR000727Target SNARE coiled-coil homology domainDomain
H [auth I]IPR006012Syntaxin/epimorphin, conserved siteConserved Site
H [auth I]IPR010989SNAREHomologous Superfamily
H [auth I]IPR006011Syntaxin, N-terminal domainDomain
H [auth I]IPR045242SyntaxinFamily
G [auth H]IPR000727Target SNARE coiled-coil homology domainDomain
G [auth H]IPR039077SNAP25, N-terminal SNARE motif, chordatesDomain
G [auth H]IPR000928SNAP-25 domainDomain
A, B, C, D, E
IPR004201CDC48, domain 2Domain
A, B, C, D, E
IPR009010Aspartate decarboxylase-like domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR003593AAA+ ATPase domainDomain
A, B, C, D, E
IPR003959ATPase, AAA-type, coreDomain
A, B, C, D, E
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A, B, C, D, E
IPR029067CDC48 domain 2-like superfamilyHomologous Superfamily
A, B, C, D, E
IPR041569AAA ATPase, AAA+ lid domainDomain
A, B, C, D, E
IPR039812Vesicle-fusing ATPaseFamily
A, B, C, D, E
IPR054419NSF, AAA+ ATPase lid domainDomain
A, B, C, D, E
IPR003960ATPase, AAA-type, conserved siteConserved Site
A, B, C, D, E
IPR003338CDC48, N-terminal subdomainDomain