6N1I | pdb_00006n1i

Cryo-EM structure of NLRC4-CARD filament


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
PSCOP2B SuperfamilyDEATH domain 8082304 3000069 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyDEATH domain 8082304 3000069 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyDEATH domain 8082304 3000069 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyDEATH domain 8082304 3000069 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyDEATH domain 8082304 3000069 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyDEATH domain 8082304 3000069 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyDEATH domain 8082304 3000069 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyDEATH domain 8082304 3000069 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyDEATH domain 8082304 3000069 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyDEATH domain 8082304 3000069 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyDEATH domain 8082304 3000069 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyDEATH domain 8082304 3000069 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyDEATH domain 8082304 3000069 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyDEATH domain 8082304 3000069 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyDEATH domain 8082304 3000069 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyDEATH domain 8082304 3000069 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
PPLATe6n1iP1 A: alpha bundlesX: PriB N-terminal domain-likeH: a+b domain in beta-lactamase/transpeptidase-like proteinsT: a+b domain in beta-lactamase/transpeptidase-like proteinsF: PLATECOD (develop294)
OPLATe6n1iO1 A: alpha bundlesX: PriB N-terminal domain-likeH: a+b domain in beta-lactamase/transpeptidase-like proteinsT: a+b domain in beta-lactamase/transpeptidase-like proteinsF: PLATECOD (develop294)
NPLATe6n1iN1 A: alpha bundlesX: PriB N-terminal domain-likeH: a+b domain in beta-lactamase/transpeptidase-like proteinsT: a+b domain in beta-lactamase/transpeptidase-like proteinsF: PLATECOD (develop294)
MPLATe6n1iM1 A: alpha bundlesX: PriB N-terminal domain-likeH: a+b domain in beta-lactamase/transpeptidase-like proteinsT: a+b domain in beta-lactamase/transpeptidase-like proteinsF: PLATECOD (develop294)
LPLATe6n1iL1 A: alpha bundlesX: PriB N-terminal domain-likeH: a+b domain in beta-lactamase/transpeptidase-like proteinsT: a+b domain in beta-lactamase/transpeptidase-like proteinsF: PLATECOD (develop294)
KPLATe6n1iK1 A: alpha bundlesX: PriB N-terminal domain-likeH: a+b domain in beta-lactamase/transpeptidase-like proteinsT: a+b domain in beta-lactamase/transpeptidase-like proteinsF: PLATECOD (develop294)
JPLATe6n1iJ1 A: alpha bundlesX: PriB N-terminal domain-likeH: a+b domain in beta-lactamase/transpeptidase-like proteinsT: a+b domain in beta-lactamase/transpeptidase-like proteinsF: PLATECOD (develop294)
IPLATe6n1iI1 A: alpha bundlesX: PriB N-terminal domain-likeH: a+b domain in beta-lactamase/transpeptidase-like proteinsT: a+b domain in beta-lactamase/transpeptidase-like proteinsF: PLATECOD (develop294)
HPLATe6n1iH1 A: alpha bundlesX: PriB N-terminal domain-likeH: a+b domain in beta-lactamase/transpeptidase-like proteinsT: a+b domain in beta-lactamase/transpeptidase-like proteinsF: PLATECOD (develop294)
GPLATe6n1iG1 A: alpha bundlesX: PriB N-terminal domain-likeH: a+b domain in beta-lactamase/transpeptidase-like proteinsT: a+b domain in beta-lactamase/transpeptidase-like proteinsF: PLATECOD (develop294)
FPLATe6n1iF1 A: alpha bundlesX: PriB N-terminal domain-likeH: a+b domain in beta-lactamase/transpeptidase-like proteinsT: a+b domain in beta-lactamase/transpeptidase-like proteinsF: PLATECOD (develop294)
EPLATe6n1iE1 A: alpha bundlesX: PriB N-terminal domain-likeH: a+b domain in beta-lactamase/transpeptidase-like proteinsT: a+b domain in beta-lactamase/transpeptidase-like proteinsF: PLATECOD (develop294)
DPLATe6n1iD1 A: alpha bundlesX: PriB N-terminal domain-likeH: a+b domain in beta-lactamase/transpeptidase-like proteinsT: a+b domain in beta-lactamase/transpeptidase-like proteinsF: PLATECOD (develop294)
CPLATe6n1iC1 A: alpha bundlesX: PriB N-terminal domain-likeH: a+b domain in beta-lactamase/transpeptidase-like proteinsT: a+b domain in beta-lactamase/transpeptidase-like proteinsF: PLATECOD (develop294)
BPLATe6n1iB1 A: alpha bundlesX: PriB N-terminal domain-likeH: a+b domain in beta-lactamase/transpeptidase-like proteinsT: a+b domain in beta-lactamase/transpeptidase-like proteinsF: PLATECOD (develop294)
AHemagglutinine6n1iA1 A: alpha bundlesX: PriB N-terminal domain-likeH: HTHT: SH3F: HemagglutininECOD (develop294)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF00619Caspase recruitment domain (CARD)Caspase recruitment domainMotif contained in proteins involved in apoptotic signaling. Predicted to possess a DEATH (Pfam:PF00531) domain-like fold . Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
NLR family CARD domain-containing protein 4

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR040535NLRC4, helical domainDomain
A, B, C, D, E
IPR053882Nlrc4-like, winged helix domainDomain
A, B, C, D, E
IPR007111NACHT nucleoside triphosphataseDomain
A, B, C, D, E
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A, B, C, D, E
IPR011029Death-like domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR032675Leucine-rich repeat domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR001315CARD domainDomain
A, B, C, D, E
IPR042220NLR family CARD domain-containing protein 4Family